View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_27 (Length: 428)

Name: NF10140A_low_27
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_27
NF10140A_low_27
[»] chr7 (14 HSPs)
chr7 (2-421)||(841773-842192)
chr7 (2-421)||(848949-849368)
chr7 (2-421)||(1206953-1207372)
chr7 (120-409)||(16290694-16290983)
chr7 (120-409)||(801827-802116)
chr7 (249-418)||(23883312-23883481)
chr7 (249-418)||(42634783-42634952)
chr7 (249-418)||(8814027-8814196)
chr7 (243-421)||(9466044-9466222)
chr7 (243-421)||(30373472-30373650)
chr7 (243-421)||(16396975-16397153)
chr7 (120-205)||(30373349-30373434)
chr7 (120-196)||(9466269-9466345)
chr7 (120-205)||(16396852-16396937)
[»] chr5 (18 HSPs)
chr5 (49-421)||(29896706-29897078)
chr5 (120-409)||(34465156-34465445)
chr5 (220-409)||(22955460-22955649)
chr5 (249-418)||(1801709-1801878)
chr5 (249-418)||(7258459-7258628)
chr5 (249-418)||(7790405-7790574)
chr5 (249-418)||(12391950-12392119)
chr5 (120-421)||(5443607-5443908)
chr5 (243-421)||(36379496-36379674)
chr5 (243-421)||(37004168-37004346)
chr5 (243-421)||(17953561-17953739)
chr5 (120-421)||(11947806-11948107)
chr5 (120-421)||(31516769-31517070)
chr5 (243-421)||(15788247-15788425)
chr5 (120-205)||(15788124-15788209)
chr5 (120-205)||(36379373-36379458)
chr5 (120-205)||(37004045-37004130)
chr5 (120-196)||(17953786-17953862)
[»] chr1 (3 HSPs)
chr1 (49-421)||(2339796-2340168)
chr1 (249-418)||(6201487-6201656)
chr1 (120-421)||(5632524-5632825)
[»] scaffold0387 (1 HSPs)
scaffold0387 (134-425)||(5723-6014)
[»] chr6 (10 HSPs)
chr6 (77-421)||(2411981-2412325)
chr6 (220-390)||(20054609-20054779)
chr6 (249-418)||(20044396-20044565)
chr6 (249-418)||(619668-619837)
chr6 (249-418)||(16821526-16821695)
chr6 (249-418)||(24147211-24147380)
chr6 (249-418)||(27513536-27513705)
chr6 (120-421)||(2410308-2410606)
chr6 (243-421)||(9139923-9140101)
chr6 (120-196)||(9139800-9139876)
[»] chr2 (3 HSPs)
chr2 (177-409)||(21763993-21764225)
chr2 (120-421)||(22945855-22946156)
chr2 (120-421)||(12380120-12380421)
[»] chr3 (12 HSPs)
chr3 (120-409)||(41436774-41437063)
chr3 (120-409)||(20439609-20439898)
chr3 (121-421)||(15596422-15596722)
chr3 (249-418)||(6197990-6198159)
chr3 (249-418)||(8807906-8808075)
chr3 (249-418)||(15533637-15533806)
chr3 (249-418)||(21611336-21611505)
chr3 (249-418)||(46397011-46397180)
chr3 (121-421)||(15914999-15915299)
chr3 (249-418)||(8620030-8620200)
chr3 (120-421)||(46376735-46377036)
chr3 (120-421)||(5954354-5954655)
[»] scaffold0019 (2 HSPs)
scaffold0019 (220-421)||(17294-17495)
scaffold0019 (72-162)||(17200-17290)
[»] scaffold0551 (2 HSPs)
scaffold0551 (249-418)||(9879-10048)
scaffold0551 (306-418)||(3822-3934)
[»] scaffold0183 (2 HSPs)
scaffold0183 (220-409)||(31828-32017)
scaffold0183 (53-165)||(32018-32130)
[»] scaffold0435 (1 HSPs)
scaffold0435 (249-421)||(12431-12603)
[»] chr4 (7 HSPs)
chr4 (249-409)||(15575638-15575798)
chr4 (240-418)||(16724575-16724753)
chr4 (249-418)||(14920939-14921108)
chr4 (249-418)||(15899271-15899440)
chr4 (249-418)||(18039850-18040019)
chr4 (249-418)||(15571510-15571679)
chr4 (249-418)||(22707540-22707709)
[»] chr8 (1 HSPs)
chr8 (249-418)||(21479703-21479872)
[»] scaffold0094 (1 HSPs)
scaffold0094 (121-421)||(38771-39071)
[»] scaffold1197 (1 HSPs)
scaffold1197 (246-390)||(2143-2287)
[»] scaffold0029 (2 HSPs)
scaffold0029 (240-390)||(74786-74936)
scaffold0029 (120-421)||(25623-25924)
[»] scaffold0441 (1 HSPs)
scaffold0441 (249-390)||(10654-10795)
[»] scaffold0104 (1 HSPs)
scaffold0104 (220-387)||(28843-29010)
[»] scaffold0002 (1 HSPs)
scaffold0002 (120-421)||(302366-302667)
[»] scaffold0595 (1 HSPs)
scaffold0595 (120-421)||(9440-9742)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 421
Target Start/End: Complemental strand, 842192 - 841773
Alignment:
Q  2 tcgagtttggtgttgctgatacggttgctgctgatatggctgctcaagatactgttggaactgcggctgataacctggttgttgaatagcattggtagcg 101  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  842192 tcgaggttgttgttgctgatacggttgctgctgatatggctgctgaggatactgttggaactgcggctgataacccggttgttcaatagcattggtagcg 842093  T
Q  102 ggggtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgt 201  Q
    || |||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |    
T  842092 ggtgtaatggtagcaacatgttgataggctgtataattttgctgaggcctcccatgggccaccataccgacctctggtgctttctttcttgggaagttat 841993  T
Q  202 tcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctcc 301  Q
    |||||||       ||||||||  | |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |    
T  841992 tcccaaatttcttggctccactgtcggaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagc 841893  T
Q  302 aaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactg 401  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||    
T  841892 aaagttcttgggcgtacttccgaccatcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctg 841793  T
Q  402 acttgggccgcggtatctct 421  Q
    |||||||| |||||||||||    
T  841792 acttgggcagcggtatctct 841773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 421
Target Start/End: Complemental strand, 849368 - 848949
Alignment:
Q  2 tcgagtttggtgttgctgatacggttgctgctgatatggctgctcaagatactgttggaactgcggctgataacctggttgttgaatagcattggtagcg 101  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  849368 tcgaggttgttgttgctgatacggttgctgctgatatggctgctgaggatactgttggaactgcggctgataacccggttgttcaatagcattggtagcg 849269  T
Q  102 ggggtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgt 201  Q
    || |||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |    
T  849268 ggtgtaatggtagcaacatgttgataggctgtataattttgctgaggcctcccatgggccaccataccgacctctggtgctttctttcttgggaagttat 849169  T
Q  202 tcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctcc 301  Q
    |||||||       ||||||||  | |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |    
T  849168 tcccaaatttcttggctccactgtcggaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagc 849069  T
Q  302 aaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactg 401  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||    
T  849068 aaagttcttgggcgtacttccgaccatcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctg 848969  T
Q  402 acttgggccgcggtatctct 421  Q
    |||||||| |||||||||||    
T  848968 acttgggcagcggtatctct 848949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 421
Target Start/End: Complemental strand, 1207372 - 1206953
Alignment:
Q  2 tcgagtttggtgttgctgatacggttgctgctgatatggctgctcaagatactgttggaactgcggctgataacctggttgttgaatagcattggtagcg 101  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  1207372 tcgaggttgttgttgctgatacggttgctgctgatatggctgctgaggatactgttggaactgcggctgataacccggttgttcaatagcattggtagcg 1207273  T
Q  102 ggggtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgt 201  Q
    || |||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |    
T  1207272 ggtgtaatggtagcaacatgttgataggctgtataattttgctgaggcctcccatgggccaccataccgacctctggtgctttctttcttgggaagttat 1207173  T
Q  202 tcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctcc 301  Q
    |||||||       ||||||||  | |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |    
T  1207172 tcccaaatttcttggctccactgtcggaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagc 1207073  T
Q  302 aaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactg 401  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||    
T  1207072 aaagttcttgggcgtacttccgaccatcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctg 1206973  T
Q  402 acttgggccgcggtatctct 421  Q
    |||||||| |||||||||||    
T  1206972 acttgggcagcggtatctct 1206953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 120 - 409
Target Start/End: Original strand, 16290694 - 16290983
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||| ||||||| |||| |||||||| || |||||||||||||  ||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  16290694 tgttgataggttggataagtttgctgaggccttccttgggccaccatactaacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 16290793  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| | ||||||||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||| ||||| ||  | |||||||||||| ||||    
T  16290794 cactggtagaagctccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccgaccatttcagcgaagttcttgggcgtact 16290893  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 409  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  16290894 tccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 16290983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 120 - 409
Target Start/End: Original strand, 801827 - 802116
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||| ||||||| |||| |||| ||| || ||||||||||||   ||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  801827 tgttgataggttggataagtttgctgagaccttccttgggccaccataataacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 801926  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
     ||| | ||||||||||| ||| ||||| | ||||||||| |||||| ||||||| || ||||||||||||||||| ||  |||||||||||||| ||||    
T  801927 aactggtagaagctccattttttactaaacatccttctcggactccttcttccaattgcacacccatgccaaccatttcagcaaagttcttgggcgtact 802026  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 409  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||| ||||||||||||||||| || |||||||||||    
T  802027 tccgaccatcttctcgtagtagaactgactgagagtttttaagaagagtttggtcatttccttctcttctatacgtgggctgacttgggc 802116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 23883312 - 23883481
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  23883312 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 23883411  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  23883412 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 23883481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 42634783 - 42634952
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  42634783 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 42634882  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  42634883 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 42634952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 8814196 - 8814027
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  8814196 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 8814097  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  8814096 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 8814027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 243 - 421
Target Start/End: Complemental strand, 9466222 - 9466044
Alignment:
Q  243 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 342  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9466222 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9466123  T
Q  343 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9466122 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9466044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 243 - 421
Target Start/End: Original strand, 30373472 - 30373650
Alignment:
Q  243 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 342  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||||||||||||||| | ||| || |    
T  30373472 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtacttccgaccatctttttgtaataaa 30373571  T
Q  343 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  30373572 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaatccgtgggctgacttgggcagcggtgtctct 30373650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 421
Target Start/End: Original strand, 16396975 - 16397153
Alignment:
Q  243 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 342  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  16396975 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 16397074  T
Q  343 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  16397075 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 16397153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 30373349 - 30373434
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 205  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||    
T  30373349 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttccc 30373434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 9466345 - 9466269
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaa 196  Q
    |||||||||||||||||| |||| |||||||| ||||| | |||||||||||| | ||| |||||||| || |||||    
T  9466345 tgttgataggctggataagtttgttgaggccttccatgagtcaccataccgacttcttgctctttcttcctcgggaa 9466269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 16396852 - 16396937
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 205  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||| ||| | |||||||||||| || ||||| | ||||||    
T  16396852 tgttgataggctggataagtttgttgaggccctccatgagtcaccatactgacttcttgttctttcttcctcgggaaatggttccc 16396937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 49 - 421
Target Start/End: Complemental strand, 29897078 - 29896706
Alignment:
Q  49 gatactgttggaactgcggctgataacctggttgttgaatagcattggtagcgggggtaatggtagaaacatgttgataggctggataattttgatgagg 148  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||| |||||||||||||||||||| |||||    
T  29897078 gatactgttggaactgcggctgataacccggttgttgaatagcattggtagcgggtgtaatggcagcaacatgctgataggctggataattttgctgagg 29896979  T
Q  149 cctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaac 248  Q
    |||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||       ||||||||  | ||||||||||||||||||||     
T  29896978 cctcccatgggccaccataccgacctctggtgctttctttcttgggaagttgttcccaaatttcttggctccactgtcggaagctccatctttaactaat 29896879  T
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  29896878 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaaatgat 29896779  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  29896778 tgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctct 29896706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 120 - 409
Target Start/End: Complemental strand, 34465445 - 34465156
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||| ||||||| |||| |||||||| || |||||||||||||  ||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  34465445 tgttgataggttggataagtttgctgaggccttccttgggccaccatactaacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 34465346  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||||    
T  34465345 cactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgtact 34465246  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 409  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  34465245 tccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 34465156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 220 - 409
Target Start/End: Original strand, 22955460 - 22955649
Alignment:
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| ||||||| ||||| ||| ||||| ||||||||||| |||||| ||||||| ||||||||||| || ||||| ||| |||||||||||||| ||||    
T  22955460 cactggcagaagttccatttttgactaaacgtccttctcggactccttcttccaattgtacacccataccgaccatttctgcaaagttcttgggcgtact 22955559  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 409  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||    
T  22955560 tccgaccatcttctcgtagtagaactgactaagagtttttaagaagaatttggtcatctccttctcttctatacgcgggctgacttgggc 22955649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 1801878 - 1801709
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  1801878 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 1801779  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  1801778 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 1801709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 7258459 - 7258628
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7258459 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7258558  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  7258559 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 7258628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 7790574 - 7790405
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7790574 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7790475  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  7790474 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 7790405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 12391950 - 12392119
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  12391950 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 12392049  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  12392050 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 12392119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 120 - 421
Target Start/End: Original strand, 5443607 - 5443908
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||| ||||| | |||||||||||| | ||| |||||||| || ||||| | ||||||          |  |    
T  5443607 tgttgataggctggataagtttgttgaggccttccatgagtcaccataccgacttcttgctctttcttcctcgggaaatggttcccggtcttcttggtcc 5443706  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || | |||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  5443707 cactggcaggagttgcattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 5443806  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| |||||||||| ||||| |||||||||||| ||||| || ||||| || ||||||||||| ||||| |||    
T  5443807 cccgaccatctttttgtaataaaaatgattcagagtttttaggaagagcttggtcatctctttctcctcaatacgtgggctgacttgggcagcggtgtct 5443906  T
Q  420 ct 421  Q
    ||    
T  5443907 ct 5443908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 421
Target Start/End: Original strand, 36379496 - 36379674
Alignment:
Q  243 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 342  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  36379496 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 36379595  T
Q  343 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  36379596 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 36379674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 421
Target Start/End: Original strand, 37004168 - 37004346
Alignment:
Q  243 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 342  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  37004168 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 37004267  T
Q  343 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  37004268 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 37004346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 243 - 421
Target Start/End: Complemental strand, 17953739 - 17953561
Alignment:
Q  243 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 342  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  17953739 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtaataaa 17953640  T
Q  343 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  17953639 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 17953561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 421
Target Start/End: Original strand, 11947806 - 11948107
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  11947806 tgttgataggctggataagtttgttgaggccctccatgtgtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 11947905  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  11947906 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 11948005  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  11948006 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 11948105  T
Q  420 ct 421  Q
    ||    
T  11948106 ct 11948107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 421
Target Start/End: Complemental strand, 31517070 - 31516769
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  31517070 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 31516971  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  31516970 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 31516871  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  31516870 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 31516771  T
Q  420 ct 421  Q
    ||    
T  31516770 ct 31516769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 421
Target Start/End: Original strand, 15788247 - 15788425
Alignment:
Q  243 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 342  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  15788247 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 15788346  T
Q  343 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  15788347 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 15788425  T

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Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 15788124 - 15788209
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 205  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||    
T  15788124 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttccc 15788209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 36379373 - 36379458
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 205  Q
    ||||| |||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||    
T  36379373 tgttggtaggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttccc 36379458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 37004045 - 37004130
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 205  Q
    ||||| |||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||    
T  37004045 tgttggtaggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttccc 37004130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 17953862 - 17953786
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaa 196  Q
    |||||||||||||||||| |||| |||||| | ||||| | |||||||||||| | ||| |||||||| || |||||    
T  17953862 tgttgataggctggataagtttgttgaggcattccatgagtcaccataccgacttcttgctctttcttcctcgggaa 17953786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 49 - 421
Target Start/End: Original strand, 2339796 - 2340168
Alignment:
Q  49 gatactgttggaactgcggctgataacctggttgttgaatagcattggtagcgggggtaatggtagaaacatgttgataggctggataattttgatgagg 148  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||| |||||    
T  2339796 gatactgttggaactgcggctgataacccggttgttgaatagcattggtagcgggcgtaatggcagcaacatgttgataagctggataattttgctgagg 2339895  T
Q  149 cctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaac 248  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||       ||||||||  | ||||||||||||||||||||     
T  2339896 cctcccatgggccaccataccgacctccggtgctttctttcttgggaagttgttcccaaatttcttagctccactgtcggaagctccatctttaactaat 2339995  T
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  2339996 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaaatgat 2340095  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  2340096 tgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctct 2340168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 6201487 - 6201656
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||| || || |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  6201487 cgtccttctcggactccttcttccaattgtacgcctataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 6201586  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    | || ||||||||||||| |||| ||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  6201587 taagggtttttaagaagagcttgatcatctctttctcttctacacgcgggatgacttgggcagcggtatc 6201656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 421
Target Start/End: Original strand, 5632524 - 5632825
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  5632524 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 5632623  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| ||  | ||| |||| ||  ||||    
T  5632624 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatttccgcgaagctctttggtgtact 5632723  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  5632724 cccgaccatctttttgtaataaaaatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtct 5632823  T
Q  420 ct 421  Q
    ||    
T  5632824 ct 5632825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 134 - 425
Target Start/End: Original strand, 5723 - 6014
Alignment:
Q  134 ataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagct 233  Q
    |||| |||| ||||| || |||||||||||||||| ||||| |||||||||||||||||||| || |||||| ||       | |||||| | ||||| |    
T  5723 ataagtttgctgaggtcttccatgggccaccatactgacctcttgttctttctttcttgggaggtggttcccgaatttcttggttccactggaagaagtt 5822  T
Q  234 ccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttct 333  Q
     |||| || ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  | ||||| |||||| ||||||||||||||||||    
T  5823 acatcctttactaaacgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcgaagtttttgggcgtacttccgaccatcttct 5922  T
Q  334 cgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcat 425  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||| |  ||||||||||| |||||||||||||||    
T  5923 cgtagtagaactgatttagagtttttaagaagagcttggtcatctctttctcttctatacgtgagctgacttgggcagcggtatctcttcat 6014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 8e-71; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 77 - 421
Target Start/End: Complemental strand, 2412325 - 2411981
Alignment:
Q  77 tggttgttgaatagcattggtagcgggggtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctat 176  Q
    |||| |||||||| |||||| |||  | || |||| || ||| |||||||| | ||||||| | |||||||||||||||||||| |||||||  || | |    
T  2412325 tggtggttgaataacattggcagcaagtgtgatggcagcaacgtgttgataagttggataagtctgatgaggcctcccatgggctaccatactaacttct 2412226  T
Q  177 tgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaact 276  Q
    |||||||| ||||||||||| | ||||||| |       | |||||  | ||||| |||| | || ||||| ||||||||||| |||||| |||||||||    
T  2412225 tgttctttttttcttgggaaatggttcccatatttcttggttccacaggtagaagttccaccctttactaaacgtccttctcgcactccttcttccaact 2412126  T
Q  277 gtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcat 376  Q
    |||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||    
T  2412125 gtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgattgagagtttttaagaaaagcttggtcat 2412026  T
Q  377 ctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    ||  || ||||||||||| ||||| |||||||| |||||||||||    
T  2412025 ctttttttcttctatacgcggactaacttgggcagcggtatctct 2411981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 220 - 390
Target Start/End: Original strand, 20054609 - 20054779
Alignment:
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| ||||||| | ||||| ||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||||  |||||||||||||| ||||    
T  20054609 cactggcagaagtttcatctctaactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatctcagcaaagttcttgggcgtact 20054708  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttcta 390  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||    
T  20054709 tccgaccatcttctcgtagtagaactgattgagagtttttaagaagagtttggtcatctctttctcttcta 20054779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 20044396 - 20044565
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  20044396 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 20044495  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  20044496 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 20044565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 619668 - 619837
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  619668 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 619767  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  619768 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 619837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 16821526 - 16821695
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  16821526 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 16821625  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    ||||||||||||||||||  |||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  16821626 tgagagtttttaagaagaggttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 16821695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 24147211 - 24147380
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  24147211 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 24147310  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| | | || ||||||||||| ||||||||    
T  24147311 tgagagtttttaagaagagcttggtcatttctttctcttctacatgcgggctgacttgggcagcggtatc 24147380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 27513705 - 27513536
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  27513705 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 27513606  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || ||||||||    
T  27513605 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatc 27513536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 120 - 421
Target Start/End: Original strand, 2410308 - 2410606
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttcttt-cttgggaagttgttcccaaannnnnnngct 218  Q
    |||||||| | ||||||| | || | ||||||||||||||| |||||||  || | ||||||||| ||| || | ||||| ||||||| |       | |    
T  2410308 tgttgataagttggataagtctgctaaggcctcccatgggctaccatactaacttcttgttcttttttttctcgagaagtggttcccatatttcttggtt 2410407  T
Q  219 ccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatac 318  Q
    ||||| | |||||||||||| || ||||| ||||||| ||  | |||| ||||||||||||||||||| |||||||||||  |||||||||||||| |||    
T  2410408 ccactggtagaagctccatcctttactaaacgtccttttcagattccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtac 2410507  T
Q  319 ttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    ||||||||||||||||||||||    | | |||||||||||||||| |||||||||||||| || ||||||||||| || || |||||||  || |||||    
T  2410508 ttccgaccatcttctcgtagta----taactgagagtttttaagaaaatcttggtcatctctttttcttctatacgcgggctaacttgggtagcagtatc 2410603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 421
Target Start/End: Original strand, 9139923 - 9140101
Alignment:
Q  243 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 342  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9139923 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9140022  T
Q  343 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9140023 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9140101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 9139800 - 9139876
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaa 196  Q
    |||||||||||||||||| |||| |||||| | ||||| | |||||||||||| | ||| |||||||| || |||||    
T  9139800 tgttgataggctggataagtttgttgaggcattccatgagtcaccataccgacttcttgctctttcttcctcgggaa 9139876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 177 - 409
Target Start/End: Original strand, 21763993 - 21764225
Alignment:
Q  177 tgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaact 276  Q
    |||||||||||||||||||||| |||||||||       | |||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||    
T  21763993 tgttctttctttcttgggaagtggttcccaaatttcttggttccactagcagaagctccatcttttactaaacgtccttctcggactccttcttccaact 21764092  T
Q  277 gtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcat 376  Q
    | |||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||  ||||||||    
T  21764093 gcacacccataccaaccatctcagcgaagttcttgggcgtacttccgaccatcttctcgtagtagaactgactaagagtttttaagaagagtttggtcat 21764192  T
Q  377 ctccttctcttctatacgaggactgacttgggc 409  Q
     ||||||||||||||||| || |||||||||||    
T  21764193 ttccttctcttctatacgcgggctgacttgggc 21764225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 120 - 421
Target Start/End: Complemental strand, 22946156 - 22945855
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||| ||||| | |||||||||||| | ||| |||||||| || ||||| | ||||||          |  |    
T  22946156 tgttgataggctggataagtttgttgaggccttccatgagtcaccataccgacttcttgctctttcttcctcgggaaatggttcccggtcttcttggtcc 22946057  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || | |||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  22946056 cactggcaggagttgcattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 22945957  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  22945956 cccgaccatctttttgtaataaaaatgattcagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtct 22945857  T
Q  420 ct 421  Q
    ||    
T  22945856 ct 22945855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 421
Target Start/End: Complemental strand, 12380421 - 12380120
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  12380421 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 12380322  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  12380321 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 12380222  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  12380221 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 12380122  T
Q  420 ct 421  Q
    ||    
T  12380121 ct 12380120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 120 - 409
Target Start/End: Complemental strand, 41437063 - 41436774
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||| ||||||| |||| |||||||| || ||||||||||||| |||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  41437063 tgttgataggttggataagtttgctgaggccttccttgggccaccatactgacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 41436964  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||||    
T  41436963 cactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgtact 41436864  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 409  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  41436863 tccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 41436774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 120 - 409
Target Start/End: Complemental strand, 20439898 - 20439609
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||| ||||||| |||| |||||||| || |||||||||||||  ||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  20439898 tgttgataggttggataagtttgctgaggccttccttgggccaccatactaacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 20439799  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||||    
T  20439798 cactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgtact 20439699  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 409  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  20439698 tccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 20439609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 121 - 421
Target Start/End: Original strand, 15596422 - 15596722
Alignment:
Q  121 gttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctcc 220  Q
    ||||||||  ||||||| |||| ||||  || ||||| |||||||||||||| | |||||||||||||||||||| ||   |||| ||       | |||    
T  15596422 gttgatagattggataagtttgttgagatcttccatgagccaccataccgacttcttgttctttctttcttgggaggtgactcccgaatttcttggttcc 15596521  T
Q  221 actagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatactt 320  Q
    ||| ||||||| | ||||||| ||||| ||||||| ||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| |||||    
T  15596522 actggcagaagttgcatcttttactaaacgtccttgtcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgtactt 15596621  T
Q  321 ccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctc 420  Q
    || |||||| | |||||||||||    ||||||||||||||||||| ||||||||||||||| || |||||||| ||  |||||||||| ||||||||||    
T  15596622 ccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagcttggtcatctccttttcctctatacgcgggttgacttgggcagcggtatctc 15596721  T
Q  421 t 421  Q
    |    
T  15596722 t 15596722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 6198159 - 6197990
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  6198159 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 6198060  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  6198059 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 6197990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 8808075 - 8807906
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  8808075 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 8807976  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  8807975 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 8807906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 15533637 - 15533806
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  15533637 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 15533736  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  15533737 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 15533806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 21611505 - 21611336
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  21611505 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 21611406  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  21611405 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 21611336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 46397011 - 46397180
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  46397011 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 46397110  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  46397111 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 46397180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 121 - 421
Target Start/End: Complemental strand, 15915299 - 15914999
Alignment:
Q  121 gttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctcc 220  Q
    ||||||||  ||||||| |||| ||||| || ||||| |||||||||| ||| | |||||||||||||||||||| ||   |||| ||       | |||    
T  15915299 gttgatagattggataagtttgttgaggtcttccatgagccaccatactgacttcttgttctttctttcttgggaggtgactcccgaatttcttggttcc 15915200  T
Q  221 actagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatactt 320  Q
    ||| ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| |||||    
T  15915199 actggcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgtactt 15915100  T
Q  321 ccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctc 420  Q
    || |||||| | |||||||||||    |||||||||||||||||||  |||||||||||||| || |||||||  ||  |||||||||| | ||||||||    
T  15915099 ccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctccttttcctctatacacgggttgacttgggcagtggtatctc 15915000  T
Q  421 t 421  Q
    |    
T  15914999 t 15914999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 8620200 - 8620030
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  8620200 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 8620101  T
Q  349 tgagagt-ttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    ||||||| ||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  8620100 tgagagttttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 8620030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 120 - 421
Target Start/End: Complemental strand, 46377036 - 46376735
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  46377036 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 46376937  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  46376936 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 46376837  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  46376836 cccgaccatctttttgtaataaaaatgatttagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 46376737  T
Q  420 ct 421  Q
    ||    
T  46376736 ct 46376735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 421
Target Start/End: Original strand, 5954354 - 5954655
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  5954354 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 5954453  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| ||||| || ||||| |||||||||||  | ||| |||| ||  ||||    
T  5954454 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactggactcccataccaaccatctccgcgaagctctttggtgtact 5954553  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  5954554 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 5954653  T
Q  420 ct 421  Q
    ||    
T  5954654 ct 5954655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 220 - 421
Target Start/End: Original strand, 17294 - 17495
Alignment:
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| ||||||| ||||||| | ||||| ||||||||||| |||||| ||||||||||||||||||| || ||||| ||| |||||||||||||| || |    
T  17294 cactggcagaagttccatctctgactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatttctgcaaagttcttgggcgtatt 17393  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||  |||||||||||||||||||||||||| || |||| |||||| || ||||||    
T  17394 tccgaccatcttctcgtagtagaactgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgatttgggcagcagtatct 17493  T
Q  420 ct 421  Q
    ||    
T  17494 ct 17495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 17200 - 17290
Alignment:
Q  72 taacctggttgttgaatagcattggtagcgggggtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggcca 162  Q
    ||||||||||||||||| |||||||||||||| || |  | || ||| |||||||| || | ||| ||||| |||||||||||||| ||||    
T  17200 taacctggttgttgaatggcattggtagcgggtgtgactgcagcaacgtgttgataagccgaatatttttgttgaggcctcccatgcgcca 17290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 9879 - 10048
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  9879 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttctgaccatcttctcgtagtagaactgat 9978  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  9979 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 10048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 3822 - 3934
Alignment:
Q  306 ttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgactt 405  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||    
T  3822 ttcttgggcgtacttctgaccatcttctcgtagtagaactgattgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgactt 3921  T
Q  406 gggccgcggtatc 418  Q
    |||| ||||||||    
T  3922 gggcagcggtatc 3934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 220 - 409
Target Start/End: Complemental strand, 32017 - 31828
Alignment:
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| ||||||| ||||||| ||||||| ||||||||||| | |||| ||||||||||||| ||||| |  ||||| ||| |||||||||||||| ||||    
T  32017 cactggcagaagttccatctctaactaaacgtccttctcggattccttcttccaactgtacgcccatactgaccatttctgcaaagttcttgggcgtact 31918  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 409  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||    
T  31917 tccgaccatcctctcgtagtagaattgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgacttgggc 31828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 32130 - 32018
Alignment:
Q  53 ctgttggaactgcggctgataacctggttgttgaatagcattggtagcgggggtaatggtagaaacatgttgataggctggataattttgatgaggcctc 152  Q
    ||||||||  || ||||||||||| || |||||||| ||||||| |||||| || || | || ||| |||||||  || | ||| ||||| ||||||||     
T  32130 ctgttggagttgtggctgataacccggctgttgaatggcattggcagcgggtgtgattgcagcaacgtgttgatgagccgaatatttttgttgaggcctt 32031  T
Q  153 ccatgggccacca 165  Q
    |||||||||||||    
T  32030 ccatgggccacca 32018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 249 - 421
Target Start/End: Original strand, 12431 - 12603
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  12431 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 12530  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 421  Q
    | |||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||| |||||||    
T  12531 taagagtttttaagaagagcttggtcatatctttctcttctacacgcgggctgacttgggcagcgatatctct 12603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 249 - 409
Target Start/End: Original strand, 15575638 - 15575798
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  15575638 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 15575737  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 409  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||||||    
T  15575738 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggc 15575798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 240 - 418
Target Start/End: Original strand, 16724575 - 16724753
Alignment:
Q  240 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 339  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  16724575 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagt 16724674  T
Q  340 agaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||||| ||  ||  |||||||||| ||||||||    
T  16724675 agaactgattgagagtttttaagaagagcttggtcatctctttctcttctacactcgggatgacttgggcagcggtatc 16724753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 14921108 - 14920939
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||||||||||||||||||||||||| ||||    
T  14921108 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgcacttccgaccatcttctcgtagtagaactgat 14921009  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| ||||    
T  14921008 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatc 14920939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 15899271 - 15899440
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||  ||||    
T  15899271 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagatctgat 15899370  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    ||||||||||||| |||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  15899371 tgagagtttttaaaaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 15899440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 18040019 - 18039850
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  18040019 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 18039920  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || ||||||||    
T  18039919 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatc 18039850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 15571510 - 15571679
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||| ||||||||||||||||||||| ||||    
T  15571510 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggagaacttcagaccatcttctcgtagtagaactgat 15571609  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| ||||    
T  15571610 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatc 15571679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 22707709 - 22707540
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |  ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  22707709 cgtccttctcggatcccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 22707610  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| ||  |||||||||| ||||||||    
T  22707609 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggatgacttgggcagcggtatc 22707540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 21479703 - 21479872
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  21479703 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 21479802  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  21479803 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 21479872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 121 - 421
Target Start/End: Original strand, 38771 - 39071
Alignment:
Q  121 gttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctcc 220  Q
    ||||||||  ||||||| |||| ||||| || ||||| |||||||||| ||| | |||||||||||||||||||| ||   |||| ||       | |||    
T  38771 gttgatagattggataagtttgttgaggtcttccatgagccaccatactgacttcttgttctttctttcttgggaggtgactcccgaatttcttggttcc 38870  T
Q  221 actagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatactt 320  Q
    ||| ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| |||||    
T  38871 actggcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgtactt 38970  T
Q  321 ccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctc 420  Q
    || |||||| | |||||||||||    |||||||||||||||||||  |||||||||||||| || |||||||| ||  |||||||||| | ||||||||    
T  38971 ccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctccttttcctctatacgcgggttgacttgggcagtggtatctc 39070  T
Q  421 t 421  Q
    |    
T  39071 t 39071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 246 - 390
Target Start/End: Complemental strand, 2287 - 2143
Alignment:
Q  246 aaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaatt 345  Q
    |||||||||||||| |||||| ||||||||||||| ||||| |||||||||||  ||||||||| |||| |||||||||||||||||||||||||||| |    
T  2287 aaccgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttctagggcgtacttccgaccatcttctcgtagtagaact 2188  T
Q  346 gattgagagtttttaagaagatcttggtcatctccttctcttcta 390  Q
    ||||||||||||||||||||| |||||||||||| || |||||||    
T  2187 gattgagagtttttaagaagagcttggtcatctctttttcttcta 2143  T

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Target: scaffold0029 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 240 - 390
Target Start/End: Complemental strand, 74936 - 74786
Alignment:
Q  240 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 339  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| |||| |||||||||||||||||||    
T  74936 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtactgccgaccatcttctcgtagt 74837  T
Q  340 agaattgattgagagtttttaagaagatcttggtcatctccttctcttcta 390  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||||||||    
T  74836 agaactgattgagagtttttaagaagagcttggtcatctctttctcttcta 74786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 120 - 421
Target Start/End: Complemental strand, 25924 - 25623
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||| ||||| | |||||||||||| | ||| |||||||| || ||||| |  |||||          |  |    
T  25924 tgttgataggctggataagtttgttgaggccttccatgagtcaccataccgacttcttgctctttcttcctcgggaaatgattcccggtcttcttggtcc 25825  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || | |||| || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  25824 cactggcaggagttgcatcctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 25725  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  25724 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 25625  T
Q  420 ct 421  Q
    ||    
T  25624 ct 25623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 249 - 390
Target Start/End: Complemental strand, 10795 - 10654
Alignment:
Q  249 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 348  Q
    |||| ||||||||||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||| ||||||||||||||||||| ||||    
T  10795 cgtctttctcgtactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgtccatcttctcgtagtagaactgat 10696  T
Q  349 tgagagtttttaagaagatcttggtcatctccttctcttcta 390  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  10695 tgagagtttttaagaagagcttggtcatctctttctcttcta 10654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 220 - 387
Target Start/End: Original strand, 28843 - 29010
Alignment:
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| ||||||| || |||| ||||||| ||||||||||| ||||||  ||||||||||||  |||| |||||||||||  |||||||||||||| ||||    
T  28843 cactggcagaagttctatctctaactaaacgtccttctcggactcctttttccaactgtacgtccataccaaccatctcagcaaagttcttgggcgtact 28942  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctctt 387  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||| |||||||    
T  28943 tccgaccatcttctcgtagtagaactgattgagggtttttaagaagagtttggtcatctctttctctt 29010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 421
Target Start/End: Complemental strand, 302667 - 302366
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  302667 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 302568  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  302567 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 302468  T
Q  320 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 419  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  302467 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 302368  T
Q  420 ct 421  Q
    ||    
T  302367 ct 302366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 421
Target Start/End: Complemental strand, 9742 - 9440
Alignment:
Q  120 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 219  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || || || | ||||||          |  |    
T  9742 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcggaaaatggttcccggtcttcttggtcc 9643  T
Q  220 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 319  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  9642 cactggcaggaggtgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 9543  T
Q  320 tccgaccatcttctcgtagt-agaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 418  Q
     || |||||||| | ||| | | || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||    
T  9542 cccaaccatctttttgtaataaaaaatgatttaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtc 9443  T
Q  419 tct 421  Q
    |||    
T  9442 tct 9440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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