View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_270 (Length: 249)
Name: NF10140A_low_270
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_270 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 15648986 - 15648760
Alignment:
| Q |
17 |
atcaagaacatggaacaagaagcaaaagccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaaga |
116 |
Q |
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| T |
15648986 |
atcaagaacatggaacaagaagcaaaagccaaaaatattttatcttgtgccataaatcaagatgattttaagagaatttcaagttgtcagacagccaaga |
15648887 |
T |
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| Q |
117 |
aaatgtgggagcatcttgacaagttaagtgtttcatacattcaannnnnnnnncaaaaactgatttatgttttcttagttgaaatattttattgattaaa |
216 |
Q |
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| T |
15648886 |
aaatgtgggagcagcttgacaagttaagtgtttcatacattcaatttttgttg-aaaatcttgtttgtgtttttttagttgaaatattttatcgattaaa |
15648788 |
T |
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| Q |
217 |
aatttgcaaaacatatatattcttcgaca |
245 |
Q |
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| T |
15648787 |
aa-ttgtaaaatatatattttctttgaca |
15648760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 15628426 - 15628291
Alignment:
| Q |
20 |
aagaacatggaacaagaagcaaaagccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaa |
119 |
Q |
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|||||| |||||| |||||||||||||||||||||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||||||||||| ||| |
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| T |
15628426 |
aagaacgtggaactagaagcaaaagccaaaaatattttatgttgtgccttaaatccagatgatcttaaaagaatttcaagttgtcagacagccaaggaaa |
15628327 |
T |
|
| Q |
120 |
tgtgggagcatcttgacaagttaagtgtttcataca |
155 |
Q |
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| T |
15628326 |
tgtgggaggagcttgacaggttaagtgtttcataca |
15628291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 15658231 - 15658099
Alignment:
| Q |
17 |
atcaagaacatggaacaagaagcaaaagccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaaga |
116 |
Q |
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| T |
15658231 |
atcaagaacatggaacaagaagcaaaagccaaaaatattttatattgtgccataaatccagatgatcttgaaagaatttcaagttgtcagacatcaaagg |
15658132 |
T |
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| Q |
117 |
aaatgtgggagcatcttgacaagttaagtgttt |
149 |
Q |
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| T |
15658131 |
aaatgtgggaggagcttgacaggttaggtgttt |
15658099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 15611344 - 15611204
Alignment:
| Q |
20 |
aagaacatggaacaagaagcaaaagccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaa |
119 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| |||||| |||| | ||||||| | | |||||||||||||| || || || ||| ||| |
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| T |
15611344 |
aagatcatggaacgagaagcaaaagccaaaaatattttatattgtgccttaaacccagatgatctaagaagaatttcaagttgccatacggcaaaggaaa |
15611245 |
T |
|
| Q |
120 |
tgtgggagcatcttgacaagttaagtgtttcatacattcaa |
160 |
Q |
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| T |
15611244 |
tgtgggaggagctcgacaagttaagtgtttcatacattcaa |
15611204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 15523907 - 15523774
Alignment:
| Q |
20 |
aagaacatggaacaagaagcaaaagccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaa |
119 |
Q |
| |
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|||| |||||||| ||||| |||||| ||||||||||||| |||||| ||||||| ||||||| |||||||||||| |||||||||||| || ||| || |
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| T |
15523907 |
aagatcatggaaccagaagtaaaagctaaaaatattttatgttgtgccataaatccagatgatcttaagagaattttaagttgtcagacggcaaaggaag |
15523808 |
T |
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| Q |
120 |
tgtgggagcatcttgacaagttaagtgtttcatac |
154 |
Q |
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| T |
15523807 |
tatgggagaagcttgacaagttaagt-tttcatac |
15523774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 15504341 - 15504216
Alignment:
| Q |
26 |
atggaacaagaagcaaaagccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaatgtggg |
125 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||| ||||| |||| || || ||| ||||||||| || ||||| || ||| ||||||||| |
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| T |
15504341 |
atggaacaagaagcaaaagccaaacatattttacgttgtgctttaaattcagattatcttgagaaaatttcaagatgccagacggcaaaggaaatgtggg |
15504242 |
T |
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| Q |
126 |
agcatcttgacaagttaagtgtttca |
151 |
Q |
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|| | |||| || ||||||| ||||| |
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| T |
15504241 |
agaagcttgccaggttaagtttttca |
15504216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 15536988 - 15536849
Alignment:
| Q |
20 |
aagaacatggaacaagaagcaaaagccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaa |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| |||||| |||| | ||||| || |||||||||||||| || || || ||| ||| |
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| T |
15536988 |
aagaacatggaactagaagcaaaagccaaaactattttatattgtgccttaaacccgaatgatcttggaagaatttcaagttgccatacggctaaggaaa |
15536889 |
T |
|
| Q |
120 |
tgtgggagcatcttgacaagttaagtgtttcatacattca |
159 |
Q |
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|||||||| | || |||| |||||||| ||| |||||||| |
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| T |
15536888 |
tgtgggaggagctcgacaggttaagtgcttcgtacattca |
15536849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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