View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_273 (Length: 249)
Name: NF10140A_low_273
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_273 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 7430821 - 7431022
Alignment:
| Q |
16 |
ggacatcaaaaccaatctttcatctaatgcaaaagtaagctagctattcaagcaaacacaatgtcaaaacgatcaccttcacagtaatcaaaacaaaatc |
115 |
Q |
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| T |
7430821 |
ggacatcaaaaccaatctttcatctaatgcaaaagtaagctagctattcaagcaaacacaatttcaaaacgatcaccttcacactattcaaaacaaaatc |
7430920 |
T |
|
| Q |
116 |
aagttctatataacccatatagcaccaaccaccaagacttcacatacagttacattcaatattacatgttttaatactattaccggtgtcaacatgtccg |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7430921 |
aagttctatataacccatatag-------caccaagacttcacatccagttacattcaatattacatgttttaatactattaccggtgtcaacatgtccg |
7431013 |
T |
|
| Q |
216 |
gtgtctgtg |
224 |
Q |
| |
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||||||||| |
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| T |
7431014 |
gtgtctgtg |
7431022 |
T |
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