View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_274 (Length: 249)
Name: NF10140A_low_274
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_274 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 33561083 - 33560863
Alignment:
| Q |
19 |
catcaaatttactccgctttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactc |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |
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| T |
33561083 |
catcaaatttactccgttttgacataggatccttgccttgtccttcacactgctttacttttaagctgagctccttcaccttttcatcgaacttgtactc |
33560984 |
T |
|
| Q |
119 |
tttcgactccagctcatcccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttct |
218 |
Q |
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|||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33560983 |
tttcgactccagttcattccatcgtacctgaaattggttctgttttgatttgaagtcctcaacttgtcttgcaaaatgcttctcttttgattcgagttct |
33560884 |
T |
|
| Q |
219 |
tcctcctttaatttaatgtcc |
239 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
33560883 |
tcctcctttaatttaatgtcc |
33560863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 39161911 - 39161704
Alignment:
| Q |
19 |
catcaaatttactccgctttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactc |
118 |
Q |
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||||||||||| || ||||||| ||||||||||| ||||||||||| | ||||||||||||||| ||||||||||| | ||| |||||| ||| ||||| |
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| T |
39161911 |
catcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactc |
39161812 |
T |
|
| Q |
119 |
tttcgactccagctcatcccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttct |
218 |
Q |
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||||| |||||| |||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| | |
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| T |
39161811 |
tttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgagttgt |
39161712 |
T |
|
| Q |
219 |
tcctcctt |
226 |
Q |
| |
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| |||||| |
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| T |
39161711 |
ttctcctt |
39161704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 39207283 - 39207490
Alignment:
| Q |
19 |
catcaaatttactccgctttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactc |
118 |
Q |
| |
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||||||||||| || ||||||| ||||||||||| ||||||||||| | ||||||||||||||| ||||||||||| | ||| |||||| ||| ||||| |
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|
| T |
39207283 |
catcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactc |
39207382 |
T |
|
| Q |
119 |
tttcgactccagctcatcccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttct |
218 |
Q |
| |
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||||| |||||| |||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| | |
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| T |
39207383 |
tttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgagttgt |
39207482 |
T |
|
| Q |
219 |
tcctcctt |
226 |
Q |
| |
|
| |||||| |
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|
| T |
39207483 |
ttctcctt |
39207490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 39389111 - 39389328
Alignment:
| Q |
19 |
catcaaatttactccgctttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactc |
118 |
Q |
| |
|
||||||||||| || |||||||| |||||| ||| |||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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|
| T |
39389111 |
catcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatactc |
39389210 |
T |
|
| Q |
119 |
tttcgactccagctcatcccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttct |
218 |
Q |
| |
|
|||| ||||||| || | |||||||| | |||| | | || |||||||||||||||||||||||| ||| ||||||| || || |||||||||||| |
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| T |
39389211 |
tttcaactccagttcgttccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaacttggcttttcaaatgctccttttgtgattcgagttcc |
39389310 |
T |
|
| Q |
219 |
tcctcctttaatttaatg |
236 |
Q |
| |
|
||||||||| |||||||| |
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|
| T |
39389311 |
tcctcctttgatttaatg |
39389328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 39222936 - 39222734
Alignment:
| Q |
37 |
ttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagctcatc |
136 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || ||||||||| ||| ||||||||||||||||| |||||||||| | ||||| ||||| || | || |
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| T |
39222936 |
ttgacacaggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttatt |
39222837 |
T |
|
| Q |
137 |
ccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttcttcctcctttaatttaatg |
236 |
Q |
| |
|
||||||| | | |||||| |||| ||||||||| || ||||| ||||| ||| |||||||||| ||||||||||||||| ||||||||| |||| ||| |
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| T |
39222836 |
ccatcgttcttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttgattcgagttcctcctcctttgattttatg |
39222737 |
T |
|
| Q |
237 |
tcc |
239 |
Q |
| |
|
||| |
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| T |
39222736 |
tcc |
39222734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 39192439 - 39192596
Alignment:
| Q |
44 |
aggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagctcatcccatcgt |
143 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| | |||||| ||||| || ||| ||||||| |
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| T |
39192439 |
aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt |
39192538 |
T |
|
| Q |
144 |
ccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttct |
201 |
Q |
| |
|
|| | ||||| |||| |||||||||||| ||||| ||||| ||| ||||||||||| |
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|
| T |
39192539 |
ccttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttct |
39192596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 39198119 - 39198276
Alignment:
| Q |
44 |
aggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagctcatcccatcgt |
143 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| | |||||| ||||| || ||| ||||||| |
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| T |
39198119 |
aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt |
39198218 |
T |
|
| Q |
144 |
ccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttct |
201 |
Q |
| |
|
|| | ||||| |||| |||||||||||| ||||| ||||| ||| ||||||||||| |
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|
| T |
39198219 |
ccttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttct |
39198276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 39215677 - 39215514
Alignment:
| Q |
43 |
taggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagctcatcccatcg |
142 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||||||| ||| |||||| |||| | |||||||||| | |||||| |||| || || | ||| || |
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| T |
39215677 |
taggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccg |
39215578 |
T |
|
| Q |
143 |
tccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctctttt |
206 |
Q |
| |
|
||| | |||||| |||| |||||||| ||| ||||||||||||| ||| ||||||| |||| |
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|
| T |
39215577 |
tccttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttctttttt |
39215514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 39468379 - 39468317
Alignment:
| Q |
48 |
tccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaac |
110 |
Q |
| |
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|||||| ||||||||||| |||||| |||||||| ||| ||||||||||||| |||||||| |
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|
| T |
39468379 |
tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaac |
39468317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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