View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_277 (Length: 249)
Name: NF10140A_low_277
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_277 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 45964158 - 45964382
Alignment:
| Q |
19 |
atcagtatcagtcttgtaatccaaagagaaattaatattgtcaaaacccatgtaacccagccattcatgcgaatcaaagagacccaaggcttccccccac |
118 |
Q |
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| T |
45964158 |
atcagtatcagtcttggaatccaaagagaaattaatattgtcaaaacccatgtaacccatccattcatgcgaataaaagagacccaaggcttccccccac |
45964257 |
T |
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| Q |
119 |
tggaataggacacacatgggtaaccgggatcactttagcaagcacaaaaacacattcatcattgcgaatacaaatacatatccctgttctattgaattaa |
218 |
Q |
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| T |
45964258 |
tggaataggacacacatgggtaaccgggatcactttagcaagcacaaaaacacattcgtcattgcgaatagaactacatatccttgttctattgaattga |
45964357 |
T |
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| Q |
219 |
ttcgaaagaaaggcatctatgttac |
243 |
Q |
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| T |
45964358 |
ttcgaaataaaggcatctatgttac |
45964382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 9561245 - 9561388
Alignment:
| Q |
36 |
aatccaaagagaaattaatattgtcaaaacccatgtaacccagccattcatgcgaatcaaagagacccaaggcttccccccactggaataggacacacat |
135 |
Q |
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| T |
9561245 |
aatccaaagtgaaatcaacactgttgaaacccatttcacccaaccattctagcgcataaaaaagacccaaggcttccccc-accagaattggacacacaa |
9561343 |
T |
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| Q |
136 |
gggtaaccgggatcactttagcaagcacaaaaacacattcatcat |
180 |
Q |
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| T |
9561344 |
gggtaactgggatcactttagcaagcacaaaaacacattcgtcat |
9561388 |
T |
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