View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_279 (Length: 248)

Name: NF10140A_low_279
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_279
NF10140A_low_279
[»] chr8 (1 HSPs)
chr8 (23-122)||(13292559-13292658)
[»] chr1 (1 HSPs)
chr1 (51-104)||(10057661-10057714)
[»] chr5 (1 HSPs)
chr5 (51-87)||(38233439-38233475)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 13292658 - 13292559
Alignment:
Q  23 ctgacgaaaaagcagaagaaatgtaagttcaattcctacaacactcgttctaagggtgaacccaaaggtgtttgagctacaccttgtcttctaggccgta 122  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13292658 ctgacgaagaagcagaagaaacgtaaattcaattcctacaacactcgttctaagggtgaacccaaaggtgtttgagctacaccttatcttctaggccgta 13292559  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 10057714 - 10057661
Alignment:
Q  51 tcaattcctacaacactcgttctaagggtgaacccaaaggtgtttgagctacac 104  Q
    |||||||||| ||||||||||  || |||||||||||||||| |||||| ||||    
T  10057714 tcaattcctataacactcgtttcaaaggtgaacccaaaggtggttgagcaacac 10057661  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 38233439 - 38233475
Alignment:
Q  51 tcaattcctacaacactcgttctaagggtgaacccaa 87  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  38233439 tcaattcctacaacactcgttccaagggtgcacccaa 38233475  T

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