View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_281 (Length: 248)

Name: NF10140A_low_281
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_281
NF10140A_low_281
[»] scaffold1666 (1 HSPs)
scaffold1666 (8-236)||(1085-1313)
[»] chr4 (10 HSPs)
chr4 (8-236)||(8043439-8043667)
chr4 (8-236)||(9793747-9793974)
chr4 (10-236)||(23271690-23271915)
chr4 (9-236)||(32462047-32462273)
chr4 (18-234)||(14503101-14503297)
chr4 (13-236)||(22736926-22737146)
chr4 (119-232)||(13595649-13595760)
chr4 (155-237)||(55378383-55378464)
chr4 (123-222)||(13448669-13448767)
chr4 (101-146)||(41167626-41167671)
[»] chr3 (11 HSPs)
chr3 (8-236)||(23887701-23887928)
chr3 (8-236)||(9304259-9304486)
chr3 (8-236)||(14283729-14283956)
chr3 (22-236)||(17936679-17936893)
chr3 (12-236)||(11987680-11987903)
chr3 (8-236)||(12903391-12903618)
chr3 (8-236)||(11480594-11480821)
chr3 (53-236)||(38166515-38166697)
chr3 (155-236)||(18738355-18738436)
chr3 (155-236)||(51962742-51962820)
chr3 (119-232)||(11636947-11637058)
[»] chr2 (7 HSPs)
chr2 (8-236)||(23779438-23779666)
chr2 (8-236)||(22254723-22254949)
chr2 (8-213)||(25254853-25255057)
chr2 (62-236)||(28032621-28032791)
chr2 (62-236)||(17203022-17203193)
chr2 (112-222)||(16294373-16294482)
chr2 (155-237)||(32464455-32464535)
[»] scaffold0615 (1 HSPs)
scaffold0615 (8-236)||(7607-7834)
[»] chr6 (7 HSPs)
chr6 (8-236)||(32278132-32278359)
chr6 (8-236)||(29664638-29664865)
chr6 (8-219)||(16301636-16301844)
chr6 (120-236)||(14151013-14151127)
chr6 (119-222)||(31469168-31469270)
chr6 (119-222)||(19670922-19671024)
chr6 (155-236)||(27739582-27739663)
[»] chr8 (9 HSPs)
chr8 (8-236)||(21495822-21496049)
chr8 (23-236)||(22884898-22885110)
chr8 (70-236)||(18617449-18617612)
chr8 (119-222)||(45476019-45476121)
chr8 (119-219)||(20708231-20708330)
chr8 (119-222)||(18263043-18263145)
chr8 (119-222)||(21233661-21233763)
chr8 (119-221)||(16000599-16000700)
chr8 (155-236)||(41508704-41508782)
[»] scaffold0207 (1 HSPs)
scaffold0207 (9-236)||(16371-16597)
[»] chr7 (8 HSPs)
chr7 (18-236)||(3048161-3048378)
chr7 (8-236)||(13319719-13319946)
chr7 (70-236)||(47482469-47482632)
chr7 (62-220)||(48623926-48624082)
chr7 (119-232)||(9641485-9641596)
chr7 (155-237)||(7286077-7286158)
chr7 (155-236)||(25122797-25122875)
chr7 (119-222)||(28388878-28388980)
[»] chr5 (7 HSPs)
chr5 (8-236)||(32949530-32949757)
chr5 (19-236)||(17908111-17908325)
chr5 (62-236)||(7527594-7527765)
chr5 (119-223)||(23236036-23236139)
chr5 (155-221)||(23985926-23985991)
chr5 (155-236)||(2030399-2030477)
chr5 (155-236)||(25003446-25003525)
[»] scaffold0342 (1 HSPs)
scaffold0342 (25-236)||(2184-2394)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-236)||(67195-67422)
[»] scaffold0173 (1 HSPs)
scaffold0173 (8-236)||(3867-4093)
[»] scaffold0032 (1 HSPs)
scaffold0032 (8-236)||(14960-15187)
[»] scaffold0125 (1 HSPs)
scaffold0125 (53-236)||(29941-30123)
[»] scaffold0066 (2 HSPs)
scaffold0066 (19-236)||(52694-52910)
scaffold0066 (19-236)||(44498-44714)
[»] scaffold0162 (2 HSPs)
scaffold0162 (8-236)||(17645-17871)
scaffold0162 (155-236)||(9612-9690)
[»] scaffold0335 (1 HSPs)
scaffold0335 (21-234)||(9660-9870)
[»] scaffold1486 (2 HSPs)
scaffold1486 (21-236)||(1371-1585)
scaffold1486 (8-68)||(1196-1256)
[»] scaffold0012 (1 HSPs)
scaffold0012 (34-236)||(35337-35535)
[»] scaffold0023 (2 HSPs)
scaffold0023 (21-236)||(58043-58257)
scaffold0023 (23-68)||(58372-58417)
[»] scaffold0833 (1 HSPs)
scaffold0833 (70-236)||(1637-1800)
[»] scaffold0017 (1 HSPs)
scaffold0017 (70-220)||(42243-42391)
[»] scaffold0001 (2 HSPs)
scaffold0001 (112-221)||(165999-166106)
scaffold0001 (8-68)||(166222-166282)
[»] scaffold0561 (1 HSPs)
scaffold0561 (112-223)||(4394-4504)
[»] scaffold0165 (2 HSPs)
scaffold0165 (119-222)||(28544-28646)
scaffold0165 (119-222)||(20560-20662)
[»] scaffold0132 (1 HSPs)
scaffold0132 (155-236)||(12379-12457)
[»] scaffold0016 (1 HSPs)
scaffold0016 (155-236)||(167749-167827)
[»] scaffold0118 (1 HSPs)
scaffold0118 (193-236)||(35761-35804)
[»] scaffold0686 (2 HSPs)
scaffold0686 (155-236)||(66-144)
scaffold0686 (155-236)||(7546-7624)
[»] scaffold0020 (1 HSPs)
scaffold0020 (119-222)||(104389-104490)
[»] chr1 (1 HSPs)
chr1 (112-218)||(18164608-18164712)
[»] scaffold0191 (1 HSPs)
scaffold0191 (207-236)||(297-326)


Alignment Details
Target: scaffold1666 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold1666
Description:

Target: scaffold1666; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 1313 - 1085
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1313 acatcgtcaacaataatcatcattcacaattccactacttccatgatttcatcaattcacataattaatcataacatggcacaacaatccaacaaatact 1214  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||||| ||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  1213 aacatcaccatcaatcacttacaaccacaagtacatcacgtaattttcacaactagaactcatgtcacctcatgatatgatcatagacacaacacctata 1114  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||||||||| ||||||||    
T  1113 tgcatgcggtaccgttcatctccaatatt 1085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 8043439 - 8043667
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  8043439 acatcatcatcaataatcatcattcacaattccactacttccatgagtttatcaattcacataattaatcttaacatggcacaacagtccaacaaataca 8043538  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||| | ||||||||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8043539 aacatcaccatcaatcatttacaaccacaagcacatcaattaattttcacaactaggactcatgtcacctcatgatatgatcctagacataacacctata 8043638  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||||||||||||||||||    
T  8043639 tgcatgcggtaccgttcatcaccaatatt 8043667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 9793747 - 9793974
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    |||| |||| ||||| |||||||| |||||||||| | ||| || ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9793747 acattatcatcaatattcatcatttacaattccaccaattctatgagttcatcaattcacataattaatcataacatgacacaacaatccatcaaataca 9793846  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  9793847 aacatcaccatcaatcacttacaaccacgagtacatcaagtaattt-cacaactaggactcatgtcaccttatgatatgatcctagacacaacacctaca 9793945  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| ||||||||||||||    
T  9793946 tgcatgcggtaccggtcatcaccaatatt 9793974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 23271915 - 23271690
Alignment:
Q  10 atcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaa 109  Q
    ||||||| ||||||||||||||||||||||||| | || ||| |||||||||||||||||| |||||||| |||||  | ||||||||| |||||||||     
T  23271915 atcatcatcaataatcatcattcacaattccaccaatttcatgagttcatcaattcacatagttaatcatgacatgatagaacaatccatcaaatacaag 23271816  T
Q  110 cgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatg 209  Q
    | ||||||| |||||||||||| |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23271815 catcaccattaatcactcacaatcacaagtacatcaattaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatg 23271717  T
Q  210 catgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||| ||||||||||||||    
T  23271716 catgcggtaccggtcatcaccaatatt 23271690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 32462273 - 32462047
Alignment:
Q  9 catcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaa 108  Q
    |||||||| |||||||||||||||| |||||||| |||||||| |||  ||||||||||||| ||||||||  | || |||||||||||| |||||||||    
T  32462273 catcatcatcaataatcatcattcataattccaccacttccatgagtctatcaattcacatagttaatcatgtcgtgacacaacaatccatcaaatacaa 32462174  T
Q  109 acgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatat 208  Q
    || ||| ||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32462173 acatcatcattaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctggacacaacacctatat 32462075  T
Q  209 gcatgcggtaccgttcatcaccaatatt 236  Q
    |||||| |||||| ||||||||||||||    
T  32462074 gcatgcagtaccggtcatcaccaatatt 32462047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 14503297 - 14503101
Alignment:
Q  18 caataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcacca 117  Q
    ||||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||                       
T  14503297 caataatcatcattcacaattccaccaattccatgagttcattaattcacataattaatcataacatgacacaacaatcca------------------- 14503217  T
Q  118 tcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggt 217  Q
    ||||||||| ||||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14503216 tcaatcacttacaaccacaagtacatcaagtaattt-cacagttaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggt 14503118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 22736926 - 22737146
Alignment:
Q  13 atcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgt 112  Q
    |||| ||||||||||||||  ||||||||| | |||||| ||||||| |||| ||||||||||||||||||||  |||||||||||   ||| ||||| |    
T  22736926 atcatcaataatcatcatttccaattccaccaattccatgagttcattaattgacataattaatcataacatgatacaacaatccattgaatgcaaacat 22737025  T
Q  113 caccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcat 212  Q
    |||||| ||||| |||||| |||||| ||| |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||  ||||||||||    
T  22737026 caccatgaatcattcacaatcacaagcataacaagtaattt-cacaactaggactcatgccacatcatgatatgatcctagacaccac-tctatatgcat 22737123  T
Q  213 gcggtaccgttcatcaccaatatt 236  Q
    ||||||||| || |||||||||||    
T  22737124 gcggtaccggtc-tcaccaatatt 22737146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 13595760 - 13595649
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||| ||||||||||||||| || ||| ||||| ||||||||||| |||  |||| ||||  ||||||||| ||||||| ||||||||||||    
T  13595760 caatcactcacatccacaagtatatcaattatttt-cacaattaggactcatgccacaacatggtatgtccctagacacgacacctaaatgcatgcggta 13595662  T
Q  219 ccgttcatcaccaa 232  Q
    ||| ||||||||||    
T  13595661 ccg-tcatcaccaa 13595649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 55378464 - 55378383
Alignment:
Q  155 cacaactaggactcatgtcacc-tcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatta 237  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||  ||||||||||||||||||| ||| |||||||||||    
T  55378464 cacaactaggactcatgccacaatcatgatatgatcctagacacaac-tctatatgcatgcggtaccggtca-caccaatatta 55378383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 13448767 - 13448669
Alignment:
Q  123 cactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgt 222  Q
    |||||||| ||||||||||||| | || ||| ||||||||||||||||| |||   ||||||||  ||||||||  || | || ||||||||||||||||    
T  13448767 cactcacatccacaagtatatccattatttt-cacaactaggactcatgccacaatatgatatgtccctagacatgacgcataaatgcatgcggtaccgt 13448669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 41167671 - 41167626
Alignment:
Q  101 aaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaa 146  Q
    |||||||||  |||| ||||||||||||||||||||||||| ||||    
T  41167671 aaatacaaatatcacaatcaatcactcacaaccacaagtatgtcaa 41167626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 23887928 - 23887701
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  23887928 acatcatcatcaataatcatcattcacaattccaccaattccatgagttcatcaattcacataattaatcataacatgacacaacaatccatcaaataca 23887829  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23887828 aacatcaccatcaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcatagacacaacacctata 23887730  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    || ||||||||||| ||||||||||||||    
T  23887729 tgtatgcggtaccggtcatcaccaatatt 23887701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 9304486 - 9304259
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||||||||||||||||||||||| | |||||| ||||||| | |||||||| ||||||||||||||  ||||||||||| ||||||||    
T  9304486 acatcatcatcaataatcatcattcacaattccaccaattccatgagttcataagttcacatacttaatcataacatgatacaacaatccatcaaataca 9304387  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9304386 aacatcaccatcaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 9304288  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||||||||||||||||||    
T  9304287 tgcatgcggtaccgttcatcaccaatatt 9304259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 14283729 - 14283956
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  14283729 acatcatcatcaataaacattattcacaattccactacttccatgagtttatcaattcacataattaatcataacatgacacaacaatccatcaagtaca 14283828  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14283829 aacatcaccattaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 14283927  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| ||||||||||||||    
T  14283928 tgcatgcggtaccggtcatcaccaatatt 14283956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 17936679 - 17936893
Alignment:
Q  22 aatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaa 121  Q
    |||||||| |||||||||||| |||| ||| |||| | ||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  17936679 aatcatcaatcacaattccaccactttcatgagtttaacaattcacatagttaatcataacatgacacaacaatccatcaaatacaaacatcaccatcaa 17936778  T
Q  122 tcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccg 221  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17936779 tcacttacaaccacaagtacatcaagtaattttcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggttccg 17936878  T
Q  222 ttcatcaccaatatt 236  Q
    |||||||||||||||    
T  17936879 ttcatcaccaatatt 17936893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 11987903 - 11987680
Alignment:
Q  12 catcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacg 111  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||| ||||| |||||||||||| |||||||||||     
T  11987903 catcatcaataatcatcattcacaattccaccacttccatgagtttatcaattcacatagttaatcatgacatgacacaacaatccatcaaatacaaaca 11987804  T
Q  112 tcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgca 211  Q
    ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  11987803 tcaccattaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcaattcacctcatgatatgatcctagacacaacacctatatgca 11987705  T
Q  212 tgcggtaccgttcatcaccaatatt 236  Q
    |||||||||| ||||||||||||||    
T  11987704 tgcggtaccggtcatcaccaatatt 11987680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 12903618 - 12903391
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  12903618 acatcgtcatcaataatcatcattcacaatttcactatttccatgagttcatcaattcacataattaatcataacatggcacaacaacccaacaaatgca 12903519  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| |||| || ||||||| ||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  12903518 aacatcactattaatcacttacaaccacaagaacatcaagtaatttgcacaactaggtctcatgccacctcatgatatgatcctagacacaacacctata 12903419  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| || |||||||||||    
T  12903418 tgcatgcggtaccgatc-tcaccaatatt 12903391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 11480821 - 11480594
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||| |||||||||| | |||||| | |||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||| |  |    
T  11480821 acatcatcatcaatattcatcattcatagttccaccaattccatgagttcatcaattcacataattaatcataatatgacacaacaatccatcaagtgta 11480722  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11480721 aacatcaccatcaatcatttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcaccttatgatatgatcctagacacaacacctata 11480623  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| ||||||||||||||    
T  11480622 tgcatgcggtaccggtcatcaccaatatt 11480594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 38166515 - 38166697
Alignment:
Q  53 agttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatt 152  Q
    ||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  38166515 agttcatcaattcacataattaatcataacatgacacaacaatacatcaaatacaaacatcaccatcaatcacttacaaccacaagtacatcaagtaatt 38166614  T
Q  153 tgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  38166615 t-cacaactaggactcatgtcacctcatgatatgatcctagacacagcacctatatgcatgcggcaccggtcatcaccaatatt 38166697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 18738355 - 18738436
Alignment:
Q  155 cacaactaggactcatgtcacc-tcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| |||  ||||| ||||||||||||||| |||| |||||||||||||||| | ||||||||||||||    
T  18738355 cacaactaggactcatgccacaatcatgttatgatcctagacacgacac-tatatgcatgcggtactgatcatcaccaatatt 18738436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 51962820 - 51962742
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| |||  |||||||||||||||||||||   |||||||||||||||||||| || |||||||||||    
T  51962820 cacaactaggactcatgccacaacatgatatgatcctagacaca--ccctatatgcatgcggtaccggtc-tcaccaatatt 51962742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 11636947 - 11637058
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    ||||| |||||||||||||||||||||| || ||| ||||| ||||||||||| |||   ||||||||  ||||||||| |||| || |||||||| |||    
T  11636947 caatccctcacaaccacaagtatatcaattatttt-cacaattaggactcatgccacaatatgatatgcccctagacacgacacataaatgcatgcagta 11637045  T
Q  219 ccgttcatcaccaa 232  Q
    ||| ||||||||||    
T  11637046 ccg-tcatcaccaa 11637058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 23779666 - 23779438
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  23779666 acatcgtcaacaataatcatcattcacaattcctctatttccatgagttcatcaattcacataattaatcattacatggcacaacaacccaacaaataca 23779567  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||  | ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23779566 aacatcaccactactcacttacaaccacaagttcatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacaactata 23779467  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||||||||||||||||||    
T  23779466 tgcatgcggtaccgttcatcaccaatatt 23779438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 22254723 - 22254949
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  22254723 acatcatcatcaataatcatcattcacaattccactactttcattagtttatcaattcacatcattaatcataacatgacacaacaatccatcaaataca 22254822  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||  |||||    
T  22254823 aacatcaccatcaatcacgtacaaccacaagtacatcaagtaatttgcacaactaggactcatgccacaacatgatatgatcctagacacaac-tctata 22254921  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| || |||||||||||    
T  22254922 tgcatgcggtaccgatc-tcaccaatatt 22254949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 25255057 - 25254853
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||| |||| ||||||||||||| |||||||| ||||| |||||||||||| ||||||||    
T  25255057 acatcatcatcaataatcatcattcacaattccaccactttcatgagtttatcaattcacatagttaatcatgacatgacacaacaatccatcaaataca 25254958  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25254957 aacatcaccattaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 25254859  T
Q  208 tgcatg 213  Q
    ||||||    
T  25254858 tgcatg 25254853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 28032791 - 28032621
Alignment:
Q  62 attcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaact 161  Q
    ||||||| |||||||||||||||  |||||||||||| |||| |||||| |||||||  |||||| ||| ||||||||| |||||||||||  |||||||    
T  28032791 attcacaaaattaatcataacataacacaacaatccatcaaacacaaacatcaccattcatcacttacatccacaagtacatcaagtaatt--cacaact 28032694  T
Q  162 aggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||| |||  |||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||    
T  28032693 aggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatt 28032621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 17203022 - 17203193
Alignment:
Q  62 attcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaact 161  Q
    ||||||| ||||| |||||||||| || ||||||||| ||||||||||| ||||| | ||||||| ||||||||||||| ||||| |||||| |||||||    
T  17203022 attcacaaaattagtcataacatgacataacaatccatcaaatacaaacatcacctttaatcacttacaaccacaagtacatcaaataattt-cacaact 17203120  T
Q  162 aggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||| |||  ||||||||||||||| |||||||  ||||||||||||||||||| || |||||||||||    
T  17203121 aggactcatgccacaacatgatatgatcctaaacacaac-tctatatgcatgcggtaccgatc-tcaccaatatt 17203193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 16294482 - 16294373
Alignment:
Q  112 tcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgca 211  Q
    |||| |||||||||||||||||||||||||||||| | |||| ||||| ||||||||||| |||   ||||||||  ||||||||| |||| || |||||    
T  16294482 tcacaatcaatcactcacaaccacaagtatatcaa-ttattttcacaattaggactcatgccacaatatgatatgcccctagacacgacacataaatgca 16294384  T
Q  212 tgcggtaccgt 222  Q
    |||||||||||    
T  16294383 tgcggtaccgt 16294373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 32464455 - 32464535
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatta 237  Q
    |||||||||||||||||||||  |||||||||||||||||||||||  ||||||||||| ||||||  ||| |||||||||||    
T  32464455 cacaactaggactcatgtcacaacatgatatgatcctagacacaac-tctatatgcatgtggtaccagtca-caccaatatta 32464535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 7834 - 7607
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||    
T  7834 acatcatcatcaataatcatcattcacaattccactatttccatgagttcatcaattcacataattaatcataacatggcataacaacccaacaaatgca 7735  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7734 aacatcaccattaatcacttacatccacaagtacatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctatacacaacacctata 7635  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| || |||||||||||    
T  7634 tgcatgcggtaccgatc-tcaccaatatt 7607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 32278359 - 32278132
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| |    
T  32278359 acatcatcatcaataatcatcattcacaattccaccaattccatgagttcatcaattcacataattaatcataacatgacacaacaatccatcaaatata 32278260  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  32278259 aacatcaccatcaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcaaaatatgatcctagacacaacacctata 32278161  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| ||||||||||||||    
T  32278160 tgcatgcggtaccggtcatcaccaatatt 32278132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 29664638 - 29664865
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    |||||||||  ||||| |||||||||||||||||| | || ||| |||||||||||||||||| ||| |||| |||||  |||| |||||| |||| |||    
T  29664638 acatcatcattaataaccatcattcacaattccaccaatttcataagttcatcaattcacatagttactcatgacatgatacaataatccatcaaacaca 29664737  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||| ||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29664738 aacatcaccattaatcacttacaaccacacgtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacgacacctata 29664836  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| ||||||||||||||    
T  29664837 tgcatgcggtaccggtcatcaccaatatt 29664865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 16301844 - 16301636
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    |||||||||  |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||    
T  16301844 acatcatcattaataatcatcattcacaattccaccaattccatgagttcatcaattcacataattaaccataacatggcataacaatccatcaaacaca 16301745  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||| ||||||| ||||||||||||| ||||||||  || ||||||||||||||||| |||  |||||||||||||||||||||||  |||||    
T  16301744 aacatcaccattaatcacttacaaccacaagtaaatcaagta--tttcacaactaggactcatgccacaacatgatatgatcctagacacaac-tctata 16301648  T
Q  208 tgcatgcggtac 219  Q
    ||||||||||||    
T  16301647 tgcatgcggtac 16301636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 14151013 - 14151127
Alignment:
Q  120 aatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtac 219  Q
    ||||||||||||||| ||| | ||||| || ||| ||||||||| ||||||| |||  |||||||||||||||||||| |||||||||||||||||||||    
T  14151013 aatcactcacaaccataagcacatcaaatatttt-cacaactagcactcatgccacaacatgatatgatcctagacacgacacctatatgcatgcggtac 14151111  T
Q  220 cgttcatcaccaatatt 236  Q
    || || |||||||||||    
T  14151112 cggtc-tcaccaatatt 14151127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 31469270 - 31469168
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||||||||||||||||||| || ||| ||||| ||||||||||| |||   ||||||||  ||||||||| |||| || ||||||||||||    
T  31469270 caatcactcacaaccacaagtatatcaatta-tttccacaattaggactcatgccacaatatgatatgtccctagacacgacacataaatgcatgcggta 31469172  T
Q  219 ccgt 222  Q
    ||||    
T  31469171 ccgt 31469168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 19670922 - 19671024
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||| ||||||||||||||| || ||| ||||| ||||||||||| |||   ||||||||  ||||||||| |||| || ||||||||||||    
T  19670922 caatcactcacatccacaagtatatcaattatttt-cacaattaggactcatgccacaatatgatatgtccctagacacgacacataaatgcatgcggta 19671020  T
Q  219 ccgt 222  Q
    ||||    
T  19671021 ccgt 19671024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 27739582 - 27739663
Alignment:
Q  155 cacaactaggactcatgtcacc-tcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| |||  ||||||||||||||||||||| ||| ||||| ||||||| || || ||||||||||||||    
T  27739582 cacaactaggactcatgccacaatcatgatatgatcctagacacgaca-ctataggcatgcgatatcggtcatcaccaatatt 27739663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 21496049 - 21495822
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||||||| |||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  21496049 acatcatcatcaataatcagcattcacaattccactacttccacgagtttatcaattcacataattaatcataacatgacacaacaatccatcaagtaca 21495950  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21495949 aacatcaccattaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 21495851  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||| | ||||||||||||||    
T  21495850 tgcatgcggtactggtcatcaccaatatt 21495822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 22884898 - 22885110
Alignment:
Q  23 atcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaat 122  Q
    ||||||||||| |||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| || |||| |||||||||||    
T  22884898 atcatcattcataattccaccaattccatgagttcatcaattcacataattaatcataacatgacacaacaatccatcaagtataaacatcaccatcaat 22884997  T
Q  123 cactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgt 222  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||     
T  22884998 cacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcaccttatgatatgatcctagacacaacatctatatgcatgtggtaccgg 22885096  T
Q  223 tcatcaccaatatt 236  Q
    ||||||||||||||    
T  22885097 tcatcaccaatatt 22885110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 18617449 - 18617612
Alignment:
Q  70 aattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactca 169  Q
    |||||||||||||||| ||| | ||| || ||||||||||| ||||||| ||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  18617449 aattaatcataacatgacaccaaaattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtatatcaagtaattt-cacaactaggactca 18617547  T
Q  170 tgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    || |||  |||||||||||||||||||||||  ||| ||||||||||||||| || |||||||||||    
T  18617548 tgccacaacatgatatgatcctagacacaac-tctaaatgcatgcggtaccgatc-tcaccaatatt 18617612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 45476121 - 45476019
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||||||||||||||||||| || ||| ||||| ||||||||||| |||   ||||||||  ||||||||| |||| || ||||||||||||    
T  45476121 caatcactcacaaccacaagtatatcaattatttt-cacaattaggactcatgccacaatatgatatgcccctagacacgacacataaatgcatgcggta 45476023  T
Q  219 ccgt 222  Q
    ||||    
T  45476022 ccgt 45476019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 20708231 - 20708330
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||| ||||||||||||||| || ||| ||||| ||| ||||||| |||  ||||||||| |||||||||| | ||||| ||||||||||||    
T  20708231 caatcactcacatccacaagtatatcaattatttt-cacaattagaactcatgccacaacatgatatgttcctagacacgatacctaaatgcatgcggta 20708329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 18263145 - 18263043
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||| |||||||||||||||   |||| ||||| || |||||||| |||   ||||||||  ||||||||| |||| || ||| ||||||||    
T  18263145 caatcactcacatccacaagtatatcaa-ccattttcacaattaagactcatgccacaatatgatatgtccctagacacgacacataaatgtatgcggta 18263047  T
Q  219 ccgt 222  Q
    ||||    
T  18263046 ccgt 18263043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 21233763 - 21233661
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||| |||||||||| |||||||||||| || ||| || || ||||||||||| |||   ||||||||  ||||||||  |||| || ||||||||||||    
T  21233763 caattactcacaaccgcaagtatatcaattatttt-caaaattaggactcatgccacaatatgatatgcccctagacatgacacataaatgcatgcggta 21233665  T
Q  219 ccgt 222  Q
    ||||    
T  21233664 ccgt 21233661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 16000599 - 16000700
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||| ||||||| ||| ||| ||||||| || ||| ||||| ||||||||||| |||  | || |||| |||||||||| ||||||| |||||||| |||    
T  16000599 caattactcacatccataagcatatcaaatatttt-cacaattaggactcatgccacaacgtggtatgttcctagacacgacacctaaatgcatgccgta 16000697  T
Q  219 ccg 221  Q
    |||    
T  16000698 ccg 16000700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 41508782 - 41508704
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| ||   |||||||||||||||||||||   |||||||||||||| | ||| || |||||||||||    
T  41508782 cacaactaggactcatgccaaaacatgatatgatcctagacaca--ccctatatgcatgcgttgccggtc-tcaccaatatt 41508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 16371 - 16597
Alignment:
Q  9 catcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaa 108  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||| |||||||||    
T  16371 catcatcattaataatcatcattcacaattccactacttccatgagtttatcaactcacataattaatcataacatgacacaacaatccatcaaatacaa 16470  T
Q  109 acgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatat 208  Q
    || ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  16471 acatcaccattaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcgtgtcacctcatgatatgatcctagacacaacatctatat 16569  T
Q  209 gcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||| ||||||||||||||    
T  16570 gcatgcggtaccggtcatcaccaatatt 16597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 3048161 - 3048378
Alignment:
Q  18 caataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcacca 117  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||    
T  3048161 caataatcatcattcacaattccaccaattccatgagttcatcaattcacataattaatcataacatgatacaacaatccatcaaatacaaacatcacca 3048260  T
Q  118 tcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggt 217  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3048261 tcaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggt 3048359  T
Q  218 accgttcatcaccaatatt 236  Q
    ||   ||||||||||||||    
T  3048360 acatgtcatcaccaatatt 3048378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 13319719 - 13319946
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||| |||| ||||||||||||| |||||||| ||||| ||| |||||||| ||||||||    
T  13319719 acatcatcatcaataatcatcattcacaattccaccactttcatgagtttatcaattcacatagttaatcatgacatgacacgacaatccatcaaataca 13319818  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||  ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  13319819 aatatcaccattaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacatatata 13319917  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||| ||||||| ||||||||||||||    
T  13319918 tgcatgtggtaccgatcatcaccaatatt 13319946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 47482632 - 47482469
Alignment:
Q  70 aattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactca 169  Q
    |||||||||||||||| ||| ||||| || ||||||||||| ||||||  ||||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  47482632 aattaatcataacatgacaccacaattcatcaaatacaaacatcaccactaatcacgtacaaccacaagtacatcaagtaattt-cacaactaggactca 47482534  T
Q  170 tgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    || |||  |||||||||||||||||||||||  |||||| |||||||||||| || |||||||||||    
T  47482533 tgccacaacatgatatgatcctagacacaac-tctatatacatgcggtaccgatc-tcaccaatatt 47482469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 62 - 220
Target Start/End: Complemental strand, 48624082 - 48623926
Alignment:
Q  62 attcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaact 161  Q
    ||||||| |||||||||||||||| ||||||||| || ||||||||||| ||||| | ||||||  ||||||||||||| |||||||||||| |||||||    
T  48624082 attcacaaaattaatcataacatgacacaacaattcatcaaatacaaacatcaccgttaatcacgtacaaccacaagtacatcaagtaattt-cacaact 48623984  T
Q  162 aggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtacc 220  Q
    |||||||||| |||  ||||||||||||||||||| | |  ||||||||||||||||||    
T  48623983 aggactcatgccacaacatgatatgatcctagacatatc-tctatatgcatgcggtacc 48623926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 9641485 - 9641596
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||| ||||||||||||||| || ||| ||||| ||||||||||| |||  |||| ||||  ||||||||| ||||||| ||||||||||||    
T  9641485 caatcactcacatccacaagtatatcaattatttt-cacaattaggactcatgccacaacatggtatgtccctagacacgacacctaaatgcatgcggta 9641583  T
Q  219 ccgttcatcaccaa 232  Q
    ||| ||||||||||    
T  9641584 ccg-tcatcaccaa 9641596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 7286158 - 7286077
Alignment:
Q  155 cacaactaggactcatgtcacc-tcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatta 237  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||  |||||||||||||||| || ||| |||||||||||    
T  7286158 cacaactaggactcatgccacaatcatgatatgatcctagacacaac-tctatatgcatgcggtatcggtca-caccaatatta 7286077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 25122797 - 25122875
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||| |||||||| |||  |||||||||||||||||||||   |||||||||||||||||||| || |||||||||||    
T  25122797 cacaactacgactcatgccacaacatgatatgatcctagacaca--ccctatatgcatgcggtaccggtc-tcaccaatatt 25122875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 28388878 - 28388980
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||||| ||||||||||||| | |||| ||||| ||||||||||| ||    ||||||||  | ||||||| |||| || ||||||||||||    
T  28388878 caatcactcacaactacaagtatatcaa-ttattttcacaattaggactcatgccataatatgatatgcccatagacacgacacataaatgcatgcggta 28388976  T
Q  219 ccgt 222  Q
    ||||    
T  28388977 ccgt 28388980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 32949530 - 32949757
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| |||||||| |||||||||||||||| |||||||| |||| ||||||||||||| |||||||| || || |||||||||||| ||||||||    
T  32949530 acatcatcatcaataatcgtcattcacaattccaccacttccatgagtttatcaattcacatagttaatcatgacgtgacacaacaatccatcaaataca 32949629  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32949630 aacatcaccataaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 32949728  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| ||||||||||||||    
T  32949729 tgcatgcggtaccggtcatcaccaatatt 32949757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 17908111 - 17908325
Alignment:
Q  19 aataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccat 118  Q
    ||||||||||| ||| | |||||| |||| ||| |||| ||||||||||||| |||||||| ||||| |||||||||||| ||||||||||| |||||||    
T  17908111 aataatcatcaatcatatttccaccactttcatgagtttatcaattcacatagttaatcatgacatgacacaacaatccatcaaatacaaacatcaccat 17908210  T
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
     ||||||| |||| |||||||| |||||||||||| ||||||||||||||||| |||  |||||||||||||||||||||||  ||||||||||||||||    
T  17908211 taatcacttacaatcacaagtacatcaagtaattt-cacaactaggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggta 17908308  T
Q  219 ccgttcatcaccaatatt 236  Q
    ||| || |||||||||||    
T  17908309 ccgatc-tcaccaatatt 17908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 7527594 - 7527765
Alignment:
Q  62 attcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaact 161  Q
    ||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||||||| |||| || ||||||| ||| | || ||||||||| ||||||     
T  7527594 attcacaaaattaatcatagcatgacacaacaatccatcaaatacaaacatcaccattaatcgcttacaaccataagcacattaagtaattt-cacaaca 7527692  T
Q  162 aggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||| |||  |||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||    
T  7527693 aggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatt 7527765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 23236139 - 23236036
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||| ||||||||||||||| || ||| ||||| ||| ||||||| |||  |||| || | ||||||||| |||||||| ||||||||||||    
T  23236139 caatcactcacatccacaagtatatcaattatttt-cacaattagaactcatgccacaacatggtaagttcctagacataacacctaaatgcatgcggta 23236041  T
Q  219 ccgtt 223  Q
    |||||    
T  23236040 ccgtt 23236036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 23985991 - 23985926
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccg 221  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||  |||||||||||||||||||    
T  23985991 cacaactaggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccg 23985926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 2030399 - 2030477
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| |||  ||||||||||||||||||||| ||  | |||||||||||||||| || |||||||||||    
T  2030399 cacaactaggactcatgccacaacatgatatgatcctagacacacca--tgtatgcatgcggtaccggtc-tcaccaatatt 2030477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 25003446 - 25003525
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||| |||||||  |||  |||||||||||||||||||||||  ||||||||||| ||||||| || |||||||||||    
T  25003446 cacaactaagactcattccacaacatgatatgatcctagacacaac-tctatatgcatgtggtaccggtc-tcaccaatatt 25003525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 2394 - 2184
Alignment:
Q  25 catcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatca 124  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||| |||||||||||||    
T  2394 catcattcacaattccaccaattccatgagttcatcaattcacataattaatcataacatgatacaacaatccatcaaatataaacatcaccatcaatca 2295  T
Q  125 ctcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttc 224  Q
    || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2294 cttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccggtc 2196  T
Q  225 atcaccaatatt 236  Q
    ||||||||||||    
T  2195 atcaccaatatt 2184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 67422 - 67195
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    |||| |||| ||||| |||||||| |||||||| | | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  67422 acattatcatcaatattcatcatttacaattccgccaattccatgagttcatcaattcacataattaatcataacatgacacaacaatccattaaataca 67323  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||| ||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  67322 aacatcaccattaatcacttacaaccacaagtacatcaagtaattt-cacaactgggactcatgtcaccttatgatatgatcctagacacaacacctata 67224  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| ||||||||||||||    
T  67223 tgcatgcggtaccggtcatcaccaatatt 67195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 3867 - 4093
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||| || |||||||||  ||||||     
T  3867 acatcatcatcaataatcatcattcacaattccaccaattccatgagttcatcaattcacatgattaatcataacatgacataacaatccattaaatacg 3966  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||||  ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3967 aacatcaccatcaatcacgtacaaccacaagtacatcaagtaatt--cacaactaggactcatgtcacctcatgatatgatcatagacacaacacctata 4064  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    | ||||||||| || ||||||||||||||    
T  4065 tacatgcggtatcggtcatcaccaatatt 4093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 15187 - 14960
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    |||| |||| ||||| |||||||| |||||||||  | ||| || ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  15187 acattatcatcaatattcatcatttacaattccatcaattctatgagtacatcaattcacataattaatcataacatgacacaacaatccatcaaataca 15088  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    ||| ||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |    
T  15087 aacatcaccatcaatcacttacaaccacaagtacatcaagtaattt-cacaattaggactcatgtcaccttatgatatgatcctagacacaacacctaca 14989  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| ||||||||||||||    
T  14988 tgcatgcggtaccggtcatcaccaatatt 14960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 29941 - 30123
Alignment:
Q  53 agttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatt 152  Q
    |||| ||||||||||||| |||||||| ||||| |||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||    
T  29941 agtttatcaattcacatagttaatcatgacatgacacaacaatccatcaaatacaaacatcaccattaatcacttacaaccacaagtacatcaagtaatt 30040  T
Q  153 tgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30041 t-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 30123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 52694 - 52910
Alignment:
Q  19 aataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccat 118  Q
    ||||||||||| |||||||||||| |||| ||| |||| |||||||| |||| |||||||| ||||| |||||||||||| ||||||||||| |||||||    
T  52694 aataatcatcaatcacaattccaccactttcatgagtttatcaattctcatagttaatcatgacatgacacaacaatccatcaaatacaaacatcaccat 52793  T
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
     ||||||| |||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52794 taatcacttacaatcacaagtacattaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacgacacctatatgcatgcggta 52892  T
Q  219 ccgttcatcaccaatatt 236  Q
    ||| ||||||||||||||    
T  52893 ccggtcatcaccaatatt 52910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 44498 - 44714
Alignment:
Q  19 aataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccat 118  Q
    ||||||||||| |||||||||| | |||| ||| |||| |||||||| |||| |||||||| ||||| |||||||||||| ||||||||||| |||||||    
T  44498 aataatcatcaatcacaattcctccactttcatgagtttatcaattctcatagttaatcatgacatgacacaacaatccatcaaatacaaacatcaccat 44597  T
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
     ||||||| |||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44598 taatcacttacaatcacaagtacatcaagtaattt-cacaactagaactcatgtcacctcatgatatgatcctagacacgacacctatatgcatgcggta 44696  T
Q  219 ccgttcatcaccaatatt 236  Q
    ||| ||||||||||||||    
T  44697 ccggtcatcaccaatatt 44714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 17645 - 17871
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaataca 107  Q
    ||||||||| ||||||||||||||||||||| ||| | || ||| |||| ||||| ||||||| |||||| | || || |||||||||||| ||||||||    
T  17645 acatcatcatcaataatcatcattcacaatttcaccaatttcatgagtttatcaactcacatagttaatcgtgacttgacacaacaatccatcaaataca 17744  T
Q  108 aacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 207  Q
    | | ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17745 a-catcaccattaatcacttacaaccacaagtacatcaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctata 17842  T
Q  208 tgcatgcggtaccgttcatcaccaatatt 236  Q
    |||||||||||||| ||||||||||||||    
T  17843 tgcatgcggtaccggtcatcaccaatatt 17871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 9690 - 9612
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| ||   |||||||||||||||||||||   |||||||||||||||||||| || |||||||||||    
T  9690 cacaactaggactcatgccataacatgatatgatcctagacaca--ccctatatgcatgcggtaccggtc-tcaccaatatt 9612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 9870 - 9660
Alignment:
Q  21 taatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatca 120  Q
    |||||||  ||||||||||||| | |||||| |||||||||||||||||| |||||||||||||  |||||||||||| ||||||||||| |||||||||    
T  9870 taatcatatttcacaattccaccaattccatgagttcatcaattcacatacttaatcataacataacacaacaatccatcaaatacaaacatcaccatca 9771  T
Q  121 atcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtacc 220  Q
    ||||||  |||||||||||| |||||||||||| ||||||||||||||||| |||  |||||||||||||||||||||||  ||||||||||||||| ||    
T  9770 atcacttccaaccacaagtacatcaagtaattt-cacaactaggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggttcc 9673  T
Q  221 gttcatcaccaata 234  Q
    | || |||||||||    
T  9672 gatc-tcaccaata 9660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1486 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold1486
Description:

Target: scaffold1486; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 1371 - 1585
Alignment:
Q  21 taatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatca 120  Q
    ||||||||| ||| | |||||| |||| ||| |||| ||||||| ||||| |||||||| ||||| |||| ||||||| || |||||||| ||||||| |    
T  1371 taatcatcaatcatatttccaccactttcatgagtttatcaattaacatagttaatcatgacatgacacaccaatccatcatatacaaacatcaccatta 1470  T
Q  121 atcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtacc 220  Q
    |||||| ||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  1471 atcacttacaactacaagtacattaagtaattt-cacaactaggactcatgtcacctcatgatatgatcatagacacgacacctaaatgcatgcggtacc 1569  T
Q  221 gttcatcaccaatatt 236  Q
    | ||||||||||||||    
T  1570 ggtcatcaccaatatt 1585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1486; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 1196 - 1256
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcaca 68  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||    
T  1196 acatcatcaacaataatcatcattcacaattccactacttccttgagtttatcaattcaca 1256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 35535 - 35337
Alignment:
Q  34 caattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaacc 133  Q
    ||||||||| | |||||| ||||||| |||| ||||||||| ||||||||||  ||||||||||| ||||||||||| ||||||| ||||| | |||| |    
T  35535 caattccaccaattccatgagttcattaatttacataattactcataacatgatacaacaatccatcaaatacaaacatcaccatgaatcatttacaatc 35436  T
Q  134 acaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaat 233  Q
    ||||||| ||||||||| || | |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35435 acaagtacatcaagtaaatt-cccaact---actcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccggtcatcaccaat 35340  T

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Target: scaffold0023 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 58257 - 58043
Alignment:
Q  21 taatcatcattcacaattccactacttccattagttcatcaattcacataattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatca 120  Q
    ||||||||| ||| | |||||| |||| | | |||| ||||||| ||||| |||||||| ||||| |||| ||||||| || |||||||| | ||||| |    
T  58257 taatcatcaatcatatttccaccactttcttgagtttatcaattaacatagttaatcatgacatgacacaccaatccatcatatacaaacattaccatta 58158  T
Q  121 atcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtacc 220  Q
    |||||| ||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  58157 atcacttacaactacaagtacattaagtaattt-cacaactaggactcatgtcacctcatgatatgatcctagacacgacacctacatgcatgcggtacc 58059  T
Q  221 gttcatcaccaatatt 236  Q
    | ||||||||||||||    
T  58058 ggtcatcaccaatatt 58043  T

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Target: scaffold0023; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 58417 - 58372
Alignment:
Q  23 atcatcattcacaattccactacttccattagttcatcaattcaca 68  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||    
T  58417 atcatcattcacaattccactacttccttgagtttatcaattcaca 58372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0833 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0833
Description:

Target: scaffold0833; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 1637 - 1800
Alignment:
Q  70 aattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactca 169  Q
    |||||||||||||||| ||| ||||| || ||||||||||| ||||||  ||||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  1637 aattaatcataacatgacaccacaattcatcaaatacaaacatcaccaataatcacgtacaaccacaagtacatcaagtaattt-cacaactaggactca 1735  T
Q  170 tgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    || |||  ||||||||||||||||||| |||  ||||||||||||||||||| || |||||||||||    
T  1736 tgccacaacatgatatgatcctagacataac-tctatatgcatgcggtaccgatc-tcaccaatatt 1800  T

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Target: scaffold0017 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 42243 - 42391
Alignment:
Q  70 aattaatcataacatggcacaacaatccaacaaatacaaacgtcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactca 169  Q
    |||||||||||||||| ||| | ||| || ||||||||||| ||||||| ||||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  42243 aattaatcataacatgacaccaaaattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtaaatcaagtaattt-cacaactaggactca 42341  T
Q  170 tgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtacc 220  Q
    || |||  |||||||||||||||||||||||  ||||||||||||||||||    
T  42342 tgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtacc 42391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 166106 - 165999
Alignment:
Q  112 tcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgca 211  Q
    ||||||| ||||||| ||||||| ||| | ||||||||||||  |||||||||||||||| |||  ||||||||||||||||||||||| ||||||||||    
T  166106 tcaccattaatcacttacaaccataagaacatcaagtaatttt-acaactaggactcatgccacaacatgatatgatcctagacacaac-cctatatgca 166009  T
Q  212 tgcggtaccg 221  Q
    ||||||||||    
T  166008 tgcggtaccg 165999  T

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Target: scaffold0001; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 166282 - 166222
Alignment:
Q  8 acatcatcaacaataatcatcattcacaattccactacttccattagttcatcaattcaca 68  Q
    ||||||||||||||||||||||||| |||||||| ||||||| | |||| |||||||||||    
T  166282 acatcatcaacaataatcatcattcgcaattccagtacttccttgagtttatcaattcaca 166222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 4504 - 4394
Alignment:
Q  112 tcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgca 211  Q
    |||| |||||||||||||| ||||||||||||||| || ||| ||||| ||||||||||| |||  |||| ||||  ||||||||| ||||||| |||||    
T  4504 tcacaatcaatcactcacatccacaagtatatcaattatttt-cacaattaggactcatgccacaacatggtatgtccctagacaccacacctaaatgca 4406  T
Q  212 tgcggtaccgtt 223  Q
    ||||||||||||    
T  4405 tgcggtaccgtt 4394  T

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Target: scaffold0165 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 28544 - 28646
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    |||||||||||||||||||||||||||| | |||| ||||| ||||||||||| |||   ||||||||  ||||||||| |||| || ||||||| ||||    
T  28544 caatcactcacaaccacaagtatatcaact-attttcacaattaggactcatgccacaatatgatatggccctagacacgacacataaatgcatgtggta 28642  T
Q  219 ccgt 222  Q
    ||||    
T  28643 ccgt 28646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 20560 - 20662
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    ||||||||||||| |||||||||||||| || ||| ||||| ||||||||||| |||   ||||||||  |||| |||| |||| || ||||||||||||    
T  20560 caatcactcacaatcacaagtatatcaattatttt-cacaattaggactcatgccacaatatgatatgcccctatacacgacacataaatgcatgcggta 20658  T
Q  219 ccgt 222  Q
    ||||    
T  20659 ccgt 20662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 12379 - 12457
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| |||  |||||||||||||||||||||   |||||||||||||||||||| || |||||||||||    
T  12379 cacaactaggactcatgccacaacatgatatgatcctagacaca--ccctatatgcatgcggtaccggtc-tcaccaatatt 12457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 167827 - 167749
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| |||  |||||||||||||||||||||   |||||||||||||||||||| || |||||||||||    
T  167827 cacaactaggactcatgccacaacatgatatgatcctagacaca--ccctatatgcatgcggtaccggtc-tcaccaatatt 167749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 35804 - 35761
Alignment:
Q  193 gacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  35804 gacacaacacctatatgcatgcggtaccggtcatcaccaatatt 35761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 144 - 66
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| |||  ||||||||||||||||||||| ||  | |||||||||||||||| || |||||||||||    
T  144 cacaactaggactcatgccacaacatgatatgatcctagacacacca--tgtatgcatgcggtaccggtc-tcaccaatatt 66  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 7624 - 7546
Alignment:
Q  155 cacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||| ||   |||||||||||||||||||||   |||||||||||||||||||| || |||||||||||    
T  7624 cacaactaggactcatgccattacatgatatgatcctagacaca--ccctatatgcatgcggtaccggtc-tcaccaatatt 7546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 104389 - 104490
Alignment:
Q  119 caatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggta 218  Q
    ||||||||||||||||||||||| |||| || ||  ||||  ||||||||||| |||   ||||||||  ||||||||| |||| || ||||||||||||    
T  104389 caatcactcacaaccacaagtatgtcaattattt--cacatttaggactcatgccacaatatgatatgtccctagacacgacacataaatgcatgcggta 104486  T
Q  219 ccgt 222  Q
    ||||    
T  104487 ccgt 104490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 18164608 - 18164712
Alignment:
Q  112 tcaccatcaatcactcacaaccacaagtatatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaacacctatatgca 211  Q
    |||| |||||||||||||| |||||||||| |||| ||  || ||||  ||||||||||| |||   ||||||||  ||| |||||||||| || |||||    
T  18164608 tcacaatcaatcactcacatccacaagtatgtcaatta--tttcacatttaggactcatgccacaatatgatatgtccctcgacacaacacataaatgca 18164705  T
Q  212 tgcggta 218  Q
    |||||||    
T  18164706 tgcggta 18164712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 326 - 297
Alignment:
Q  207 atgcatgcggtaccgttcatcaccaatatt 236  Q
    ||||||||||||||||||||||||||||||    
T  326 atgcatgcggtaccgttcatcaccaatatt 297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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