View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_282 (Length: 248)

Name: NF10140A_low_282
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_282
NF10140A_low_282
[»] chr4 (5 HSPs)
chr4 (10-236)||(24666621-24666847)
chr4 (10-240)||(34941551-34941782)
chr4 (10-241)||(18363426-18363653)
chr4 (10-241)||(36599275-36599502)
chr4 (57-132)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (10-129)||(26240615-26240735)
chr1 (149-240)||(26240779-26240870)
[»] chr3 (2 HSPs)
chr3 (57-241)||(53242714-53242900)
chr3 (34-240)||(43479315-43479510)
[»] chr2 (2 HSPs)
chr2 (70-236)||(19697410-19697568)
chr2 (179-236)||(13265594-13265651)
[»] chr8 (1 HSPs)
chr8 (138-224)||(32566479-32566563)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 24666621 - 24666847
Alignment:
Q  10 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24666621 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 24666720  T
Q  110 cagatttcagaggagttgaaaaggacgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 209  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| |    
T  24666721 cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca 24666820  T
Q  210 accattgattcaatcaaacggtatttt 236  Q
    |||||||||||||||||||||||||||    
T  24666821 accattgattcaatcaaacggtatttt 24666847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 34941782 - 34941551
Alignment:
Q  10 agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 108  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34941782 agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 34941683  T
Q  109 acagatttcagaggagttgaaaaggacgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatcta 208  Q
    ||||||||||| ||||||||| |||| ||||| |||||| ||||||||||||  ||||||||||||||| |||||||||| |||||||| |||||||||     
T  34941682 acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc 34941583  T
Q  209 aaccattgattcaatcaaacggtattttcttc 240  Q
    |||| |||||||||||||||||||||||||||    
T  34941582 aaccgttgattcaatcaaacggtattttcttc 34941551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 18363426 - 18363653
Alignment:
Q  10 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  18363426 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 18363523  T
Q  110 cagatttcagaggagttgaaaaggacgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 209  Q
    |||||||||| |||||||  ||||| ||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  18363524 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 18363621  T
Q  210 accattgattcaatcaaacggtattttcttcg 241  Q
    ||||||||||||||| || |||||||||||||    
T  18363622 accattgattcaatcgaatggtattttcttcg 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 36599502 - 36599275
Alignment:
Q  10 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  36599502 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 36599405  T
Q  110 cagatttcagaggagttgaaaaggacgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 209  Q
    |||||||||| |||||||  ||||| ||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  36599404 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 36599307  T
Q  210 accattgattcaatcaaacggtattttcttcg 241  Q
    ||||||||||||||| || |||||||||||||    
T  36599306 accattgattcaatcgaatggtattttcttcg 36599275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
Q  57 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 132  Q
    |||||||||||| ||| ||||||||||||||| ||||||| | | | |||| ||  ||||||||||||||||||||    
T  8752465 tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag 8752390  T

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Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 26240615 - 26240735
Alignment:
Q  10 agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 108  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26240615 agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 26240714  T
Q  109 acagatttcagaggagttgaa 129  Q
    ||| ||||||  |||||||||    
T  26240715 acatatttcaagggagttgaa 26240735  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 26240779 - 26240870
Alignment:
Q  149 agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtattttcttc 240  Q
    ||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  26240779 agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtattttcttc 26240870  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 53242900 - 53242714
Alignment:
Q  57 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggacgaagaaatataataggg-aca 155  Q
    |||||||||| | ||||||| ||||||||||||||| | ||||| ||||||||||||||| |   |||||||| |||| ||| ||||||||||||| |||    
T  53242900 tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca 53242801  T
Q  156 agatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccattgattcaatcaaacggtattttcttcg 241  Q
    | |||  | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  53242800 aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtattttcttcg 53242714  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 240
Target Start/End: Original strand, 43479315 - 43479510
Alignment:
Q  34 tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 132  Q
    |||| ||||||| || | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||           | |||||||| |     
T  43479315 tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattt-----------aagagttgaataa 43479403  T
Q  133 gacgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggta 232  Q
    || |||||||||||||||| |||| |||  |||| |||||||||| ||||||| ||    | | |||||||||||  |||||||| ||||||||| | ||    
T  43479404 gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct-aaaaaaaatattaataaatcttgaccattgaatcaatcaaatgata 43479502  T

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Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 19697568 - 19697410
Alignment:
Q  70 aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggacgaagaaatataatagggacaagatttaatgttaa 169  Q
    ||||||||||||||||||| |||||||||||||| ||||       | || ||||||||||| || |||||||||||||||||||||||||  |||||||    
T  19697568 aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa 19697476  T
Q  170 aatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatttt 236  Q
    |||||||| |||||||||||||| |||| || |||||| || ||||||||||||||||| |||||||    
T  19697475 aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtatttt 19697410  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 13265651 - 13265594
Alignment:
Q  179 atgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatttt 236  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||    
T  13265651 atgttctcatttttatttttaataattctaaaccattgatttaatccaacggtatttt 13265594  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 32566479 - 32566563
Alignment:
Q  138 agaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatc 224  Q
    |||||||||||||||||||||||  |||| ||||||| || |||||||||||||  |||| |||||||||  |||||||| ||||||    
T  32566479 agaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaatcaatc 32566563  T

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