View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_284 (Length: 248)

Name: NF10140A_low_284
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_284
NF10140A_low_284
[»] chr1 (8 HSPs)
chr1 (26-248)||(48585451-48585673)
chr1 (28-248)||(48640024-48640244)
chr1 (83-216)||(48661708-48661841)
chr1 (83-196)||(48618046-48618159)
chr1 (81-240)||(48667279-48667438)
chr1 (83-248)||(48628990-48629155)
chr1 (83-202)||(48653290-48653409)
chr1 (85-202)||(11547401-11547518)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 248
Target Start/End: Complemental strand, 48585673 - 48585451
Alignment:
Q  26 cagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48585673 cagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaatcatgctgatttaaacaaaccatt 48585574  T
Q  126 ttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcacggactaattccgctgctgtt 225  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48585573 ttcatgtatcataaacaattatttttttccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgtt 48585474  T
Q  226 ttcaccacttgctataactatgt 248  Q
    |||||||||| ||||||||||||    
T  48585473 ttcaccacttactataactatgt 48585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 48640244 - 48640024
Alignment:
Q  28 gccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccatttt 127  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||| || |||||| ||||| || ||||||||||| |||| ||||||||||||||    
T  48640244 gccttcagagctcttcagcactatgctgaaattgaggttgctggcagacactttatttcacaaatgataaagaatcatgccgattcaaacaaaccatttt 48640145  T
Q  128 catgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcacggactaattccgctgctgtttt 227  Q
    |||||||||||||||| ||       |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  48640144 catgtatcataaacaactatttttttccatgggtttgtgacgttgctaatgaacacaatattccttctgttttgtcatggactaattccgctgctgtttt 48640045  T
Q  228 caccacttgctataactatgt 248  Q
    |||||||| ||||||||||||    
T  48640044 caccacttactataactatgt 48640024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 48661841 - 48661708
Alignment:
Q  83 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca 182  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||||||         ||||||||||||||| | |||  ||||||    
T  48661841 tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca 48661742  T
Q  183 caatattccttctgttttatcacggactaattcc 216  Q
    |||||||||||||| ||||| | |||||||||||    
T  48661741 caatattccttctgctttattatggactaattcc 48661708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 48618046 - 48618159
Alignment:
Q  83 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca 182  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||| ||| |||||||    
T  48618046 tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatgaaca 48618145  T
Q  183 caatattccttctg 196  Q
       |||||||||||    
T  48618146 tggtattccttctg 48618159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 48667438 - 48667279
Alignment:
Q  81 tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaa 180  Q
    |||||||||||| || ||||||||||||||||  ||||||||| |||||||||| ||||||||          ||||||||| ||||| | |||  ||||    
T  48667438 tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaaccctttttttccatgggttagtgatatagcttttgaa 48667339  T
Q  181 cacaatattccttctgttttatcacggactaattccgctgctgttttcaccacttgctat 240  Q
    |||||||||||||||| ||| | | ||||||||||   |||||||||||||| |||||||    
T  48667338 cacaatattccttctgctttgttatggactaattctagtgctgttttcaccatttgctat 48667279  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 248
Target Start/End: Complemental strand, 48629155 - 48628990
Alignment:
Q  83 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca 182  Q
    ||||| |||| ||||||||||||||||||| ||  |||||| |||||||||||||| |||||         ||||||||||| ||||| |||  ||||||    
T  48629155 tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagcttttgaaca 48629056  T
Q  183 caatattccttctgttttatcacggactaattccgctgctgttttcaccacttgctataactatgt 248  Q
      | |||||||||| ||||||| ||| ||||||   |||||||||| |||||| ||||||||||||    
T  48629055 tgacattccttctgctttatcatggaataattctagtgctgttttcgccacttactataactatgt 48628990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 48653409 - 48653290
Alignment:
Q  83 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca 182  Q
    |||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| |||         || |||||||||||||| ||| |||||||    
T  48653409 tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatgaaca 48653310  T
Q  183 caatattccttctgttttat 202  Q
       |||||||||||||||||    
T  48653309 tggtattccttctgttttat 48653290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 11547518 - 11547401
Alignment:
Q  85 tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacaca 184  Q
    |||||||| ||||||||||||| ||| | |||||||||| |||| |||||||||||||||         || |||||||||||||| ||| |||||||      
T  11547518 tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg 11547419  T
Q  185 atattccttctgttttat 202  Q
     |||||||||||||||||    
T  11547418 gtattccttctgttttat 11547401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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