View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_285 (Length: 248)
Name: NF10140A_low_285
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_285 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 12836448 - 12836220
Alignment:
| Q |
5 |
acatgacagagctttacagcttccagagctgaaaaaacttgttcaggtattgaaaaagaagagggaaagtgaagggaagtgtagtgatgggaaatgtgtt |
104 |
Q |
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| T |
12836448 |
acatgacatagctttacagcttccagagctgaaaaaacttgttcaggtattgaaaaagaagagggaaagtgaagggaagtgtagtgatgggaaatgtgtt |
12836349 |
T |
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| Q |
105 |
tcaggggatgnnnnnnnggttggaacaggacctggtgatcctgagttattgactcttaaggctgtaagggttattaagagtgctgatttgttgttgtatg |
204 |
Q |
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| T |
12836348 |
tcaggggatgtttttttggttggaacaggacctggtgatcctgaattgttgactcttaaggctgttagagttattaagagtgctgatttgttgttgtatg |
12836249 |
T |
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| Q |
205 |
ataggttggtttctaatgatgttttggat |
233 |
Q |
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| T |
12836248 |
ataggttggttagtaatgatgttttggat |
12836220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 8248269 - 8248050
Alignment:
| Q |
14 |
agctttacagcttccagagctgaaaaaacttgttcaggtattgaaaaagaagagggaaagtgaagggaagtgtagtgatgggaaatgtgtttcaggggat |
113 |
Q |
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| T |
8248269 |
agctttacagcttccagagctgaaaaagcttgttaaggtattgaaagaaaagagggaaagtgaagggaagtgtagtgaaggggagtgtgtgaagggtgat |
8248170 |
T |
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| Q |
114 |
gnnnnnnnggttggaacaggacctggtgatcctgagttattgactcttaaggctgtaagggttattaagagtgctgatttgttgttgtatgataggttgg |
213 |
Q |
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| T |
8248169 |
gtgtttttggttggaacaggacctggtgatcctgagttgttgactgttaaggctgttagagttattaagagtgctgatttgttgttgtatgataggttgg |
8248070 |
T |
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| Q |
214 |
tttctaatgatgttttggat |
233 |
Q |
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| T |
8248069 |
ttagtaatgatgttttggat |
8248050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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