View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_286 (Length: 248)

Name: NF10140A_low_286
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_286
NF10140A_low_286
[»] chr4 (12 HSPs)
chr4 (19-236)||(49108685-49108905)
chr4 (71-236)||(49106581-49106744)
chr4 (89-236)||(50077251-50077397)
chr4 (42-232)||(49533682-49533868)
chr4 (148-236)||(11652444-11652532)
chr4 (172-236)||(3461194-3461258)
chr4 (186-236)||(26984719-26984769)
chr4 (186-236)||(26998792-26998842)
chr4 (186-232)||(48205836-48205882)
chr4 (182-222)||(34481155-34481195)
chr4 (188-227)||(26982549-26982588)
chr4 (188-232)||(6431966-6432010)
[»] chr6 (4 HSPs)
chr6 (89-236)||(10795942-10796088)
chr6 (89-236)||(10791704-10791850)
chr6 (181-236)||(30521242-30521297)
chr6 (188-234)||(8875696-8875742)
[»] chr1 (20 HSPs)
chr1 (71-236)||(38175582-38175745)
chr1 (171-236)||(14654392-14654457)
chr1 (171-236)||(14664183-14664248)
chr1 (171-236)||(14669761-14669826)
chr1 (171-236)||(14706078-14706143)
chr1 (171-236)||(14708568-14708633)
chr1 (171-236)||(14716281-14716346)
chr1 (171-236)||(33988060-33988125)
chr1 (172-236)||(28366251-28366315)
chr1 (174-236)||(14676625-14676687)
chr1 (174-236)||(14683743-14683805)
chr1 (171-236)||(14674471-14674536)
chr1 (171-236)||(14679849-14679914)
chr1 (174-236)||(14681592-14681654)
chr1 (181-236)||(14652525-14652580)
chr1 (181-236)||(14662316-14662371)
chr1 (178-232)||(14667167-14667221)
chr1 (186-236)||(11872533-11872583)
chr1 (187-236)||(37422175-37422224)
chr1 (177-222)||(28698549-28698594)
[»] chr5 (4 HSPs)
chr5 (87-236)||(7524875-7525023)
chr5 (171-236)||(1716504-1716569)
chr5 (148-236)||(3643607-3643695)
chr5 (186-236)||(4103250-4103300)
[»] chr8 (12 HSPs)
chr8 (148-236)||(41841204-41841292)
chr8 (94-236)||(40054225-40054367)
chr8 (175-236)||(44878977-44879038)
chr8 (175-236)||(44880883-44880944)
chr8 (178-236)||(10944451-10944509)
chr8 (186-236)||(37679760-37679810)
chr8 (188-236)||(37682064-37682112)
chr8 (174-224)||(42872514-42872564)
chr8 (198-236)||(44582870-44582908)
chr8 (148-224)||(42220909-42220985)
chr8 (173-236)||(42555135-42555198)
chr8 (148-236)||(42091988-42092075)
[»] chr2 (20 HSPs)
chr2 (105-236)||(43849973-43850104)
chr2 (171-236)||(8979312-8979377)
chr2 (171-236)||(9026776-9026841)
chr2 (171-236)||(30731998-30732063)
chr2 (171-232)||(8973302-8973363)
chr2 (171-236)||(9032043-9032108)
chr2 (175-236)||(32918074-32918135)
chr2 (173-232)||(9023439-9023498)
chr2 (178-236)||(9008018-9008076)
chr2 (180-236)||(2841069-2841125)
chr2 (171-234)||(9020837-9020900)
chr2 (174-232)||(8984686-8984744)
chr2 (186-236)||(30733993-30734043)
chr2 (171-234)||(9030388-9030451)
chr2 (186-236)||(19232451-19232501)
chr2 (172-232)||(8992139-8992199)
chr2 (171-236)||(8988445-8988510)
chr2 (171-236)||(9016483-9016548)
chr2 (188-236)||(10763930-10763978)
chr2 (186-219)||(39814117-39814150)
[»] chr3 (1 HSPs)
chr3 (186-229)||(15758562-15758605)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 49108905 - 49108685
Alignment:
Q  19 catcacgttaaaaaattaatga-----aggaaacgaaacttggcagcagatggtttataagagtcagtcacaaaaggtggtactgcatataagtcccaca 113  Q
    ||||||||||||||||||||||     |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  49108905 catcacgttaaaaaattaatgatttaaaggaaacgaaacttagcagcagatggtttataagagtcagtcacaa--ggtggtactgcatataagtcccaca 49108808  T
Q  114 tcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatgcctttctcggccttttggctaagatcaa 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  49108807 tcgggtaataaggaaaggaactgaatagacagttgatataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaa 49108708  T
Q  214 gtgtagtatctgttcttatcagt 236  Q
    |||||||||||||||||||||||    
T  49108707 gtgtagtatctgttcttatcagt 49108685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 49106744 - 49106581
Alignment:
Q  71 taagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcct 170  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||     
T  49106744 taagagtcagtcacaa--ggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagcca 49106647  T
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
      |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106646 ccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 49106581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 50077397 - 50077251
Alignment:
Q  89 ggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatgcct 188  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||| | | |||||||||||||||| ||||||||| |   ||||||||||||| |||    
T  50077397 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 50077299  T
Q  189 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077298 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 50077251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 49533868 - 49533682
Alignment:
Q  42 ggaaacgaaacttggcagcagatggtttataagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatag 141  Q
    ||||||||||| | |||||||||||| | ||||||||||||||||||  |||||||||||| |||||||||||||| |||||| ||||| |||||| |||    
T  49533868 ggaaacgaaacatagcagcagatggtgtgtaagagtcagtcacaaaa--tggtactgcataaaagtcccacatcggctaatgaagaaagaaactgattag 49533771  T
Q  142 acagttgatataaaatcagaagccatcctatctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttat 232  Q
    ||||||||||||||| ||||||||| ||  | || |||| ||| ||||||||||||  ||||||||||||||||| | |||||||||||||    
T  49533770 acagttgatataaaaccagaagccagcccttattccaacccatacctttctcggcc-cttggctaagatcaagtgca-tatctgttcttat 49533682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 11652532 - 11652444
Alignment:
Q  148 gatataaaatcagaagccatcctatctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||| ||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652532 gatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 11652444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 3461258 - 3461194
Alignment:
Q  172 tctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461258 tctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 3461194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 26984769 - 26984719
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26984769 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 26984719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 26998842 - 26998792
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26998842 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 26998792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 48205836 - 48205882
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtagtatctgttcttat 232  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  48205836 cctttctcggccttttagctaagattaagtgtagtatctgttcttat 48205882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 34481195 - 34481155
Alignment:
Q  182 catgcctttctcggccttttggctaagatcaagtgtagtat 222  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  34481195 catgcctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  188 tttctcggccttttggctaagatcaagtgtagtatctgtt 227  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 6432010 - 6431966
Alignment:
Q  188 tttctcggccttttggctaagatcaagtgtagtatctgttcttat 232  Q
    ||||||||||| ||||||||||||| || |||||||| |||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttat 6431966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 10796088 - 10795942
Alignment:
Q  89 ggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatgcct 188  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||| ||||||||| |   ||||||||||||| |||    
T  10796088 ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactgagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 10795990  T
Q  189 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10795989 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 10795942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 10791850 - 10791704
Alignment:
Q  89 ggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatgcct 188  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||| | | |||||||||||||||| ||||||||| |   ||||||||||||| |||    
T  10791850 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccaactcttctttcaactcatacct 10791752  T
Q  189 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10791751 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 10791704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 30521242 - 30521297
Alignment:
Q  181 tcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagt 30521297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 8875696 - 8875742
Alignment:
Q  188 tttctcggccttttggctaagatcaagtgtagtatctgttcttatca 234  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||    
T  8875696 tttcccggccttttggctaagatcaagtgtaatatctgttcttatca 8875742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 38175745 - 38175582
Alignment:
Q  71 taagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcct 170  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||| |||| | || |||||| |||||||| |||| || |  ||    
T  38175745 taagagtcggtcacaa--ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatacagttcatataaaagcagatgcgaggct 38175648  T
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175647 tcatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 38175582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 14654457 - 14654392
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654457 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14654392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 14664248 - 14664183
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664248 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14664183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 14669826 - 14669761
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669826 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14669761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 14706078 - 14706143
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706078 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14706143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 14708568 - 14708633
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708568 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14708633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 14716281 - 14716346
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716281 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14716346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 33988060 - 33988125
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988060 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 33988125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 28366315 - 28366251
Alignment:
Q  172 tctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 28366251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 14676625 - 14676687
Alignment:
Q  174 tttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14676687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 14683743 - 14683805
Alignment:
Q  174 tttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14683805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 14674471 - 14674536
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674471 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14674536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 14679849 - 14679914
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679849 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14679914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 14681592 - 14681654
Alignment:
Q  174 tttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14681654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 14652525 - 14652580
Alignment:
Q  181 tcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14652580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 14662316 - 14662371
Alignment:
Q  181 tcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14662371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 14667221 - 14667167
Alignment:
Q  178 aactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttat 232  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttat 14667167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 11872583 - 11872533
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  11872583 cctttctcggccttttgactaagatcaagtgtactatctgttcttatcagt 11872533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 37422175 - 37422224
Alignment:
Q  187 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagt 37422224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 28698549 - 28698594
Alignment:
Q  177 caactcatgcctttctcggccttttggctaagatcaagtgtagtat 222  Q
    |||||||| | |||||||| ||||||||||||||||| ||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtat 28698594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 7524875 - 7525023
Alignment:
Q  87 aaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatgc 186  Q
    |||||||| ||||||| ||||||||||||||||||||| |||| ||||||| |||||||| ||||||||| || | || |     | |||||| |||| |    
T  7524875 aaggtggtgctgcataaaagtcccacatcgggtaatgaagaaaagaactgagtagacagtggatataaaagca-atgcaaggtgttgtttcaagtcatac 7524973  T
Q  187 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524974 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 7525023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 1716569 - 1716504
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716569 atcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 1716504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 3643607 - 3643695
Alignment:
Q  148 gatataaaatcagaagccatcctatctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||| ||||||| |  ||  |||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643607 gatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 3643695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 4103250 - 4103300
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||| || |||||| ||||||||||||||||||||||||||||||||    
T  4103250 cctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagt 4103300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 41841292 - 41841204
Alignment:
Q  148 gatataaaatcagaagccatcctatctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841292 gatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 41841204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 40054225 - 40054367
Alignment:
Q  94 tactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatgcctttctc 193  Q
    ||||||||| |||||||||||||  |||||| |||||||||||| |||||| | |||||||||  ||| || |  |    ||| || |||| ||||||||    
T  40054225 tactgcataaaagtcccacatcgaataatgaagaaaggaactgagtagacactggatataaaagaagatgcgaggcctcattttaattcatacctttctc 40054324  T
Q  194 ggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40054325 ggccttttggctaagatcaagtgtagtatctgttcttatcagt 40054367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 44878977 - 44879038
Alignment:
Q  175 ttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 44879038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 44880944 - 44880883
Alignment:
Q  175 ttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 44880883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 10944509 - 10944451
Alignment:
Q  178 aactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagt 10944451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 37679760 - 37679810
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679760 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 37679810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 37682064 - 37682112
Alignment:
Q  188 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37682064 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 37682112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  174 tttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatct 224  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 44582870 - 44582908
Alignment:
Q  198 ttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagt 44582908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 42220985 - 42220909
Alignment:
Q  148 gatataaaatcagaagccatcctatctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatct 224  Q
    ||||||||| |||| || | | || |||||||||||| | ||| |||| ||||||||||||||||||||||||||||    
T  42220985 gatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct 42220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 42555198 - 42555135
Alignment:
Q  173 ctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||| ||||||| |  |||||||||||||||||||| || ||||||| ||||||||    
T  42555198 ctttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagt 42555135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 42091988 - 42092075
Alignment:
Q  148 gatataaaatcagaagccatcctatctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||| ||||||| | |  |||||| ||||||| |||||||  |||||||| |||| || ||||||| ||| |||||||||||||    
T  42091988 gatataaaaccagaagcaaactcatctttaaactcatacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagt 42092075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 43849973 - 43850104
Alignment:
Q  105 agtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagcc-atcctatctttcaactcatgcctttctcggccttttgg 203  Q
    |||||||||||||||||| | ||||||| |||| |||||||  ||||||||| |||| ||  | ||| | ||||||||||| ||||||||||||||||||    
T  43849973 agtcccacatcgggtaatcaagaaaggatctgagtagacagaggatataaaagcagatgcgtagcct-tatttcaactcatacctttctcggccttttgg 43850071  T
Q  204 ctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||||||||||||||||||||||    
T  43850072 ctaagatcaagtgtagtatctgttcttatcagt 43850104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 8979312 - 8979377
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979312 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 8979377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 9026776 - 9026841
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026776 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 9026841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 30731998 - 30732063
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30731998 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 30732063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 8973302 - 8973363
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttat 232  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8973302 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttat 8973363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 9032043 - 9032108
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9032043 atctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagt 9032108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 32918074 - 32918135
Alignment:
Q  175 ttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 32918135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 9023439 - 9023498
Alignment:
Q  173 ctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttat 232  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9023439 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttat 9023498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 9008018 - 9008076
Alignment:
Q  178 aactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 9008076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 2841125 - 2841069
Alignment:
Q  180 ctcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 2841069  T

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Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 9020837 - 9020900
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 234  Q
    ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  9020837 atctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatca 9020900  T

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Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 8984686 - 8984744
Alignment:
Q  174 tttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttat 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  8984686 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttat 8984744  T

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Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 30733993 - 30734043
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30733993 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 30734043  T

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Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 9030388 - 9030451
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 234  Q
    ||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||    
T  9030388 atctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatca 9030451  T

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Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 19232501 - 19232451
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19232501 cctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagt 19232451  T

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Target: chr2; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 8992139 - 8992199
Alignment:
Q  172 tctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttat 232  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  8992139 tcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttat 8992199  T

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Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 8988445 - 8988510
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    ||||||||||| || || |||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  8988445 atctttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagt 8988510  T

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Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 9016483 - 9016548
Alignment:
Q  171 atctttcaactcatgcctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||| ||||||| ||||  ||| |||||||||||||||||| ||||||||||||||||||||||    
T  9016483 atcttttaactcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagt 9016548  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 10763978 - 10763930
Alignment:
Q  188 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 236  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagt 10763930  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 39814117 - 39814150
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtag 219  Q
    ||||||||||||||||||||| ||||||||||||    
T  39814117 cctttctcggccttttggctatgatcaagtgtag 39814150  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 15758605 - 15758562
Alignment:
Q  186 cctttctcggccttttggctaagatcaagtgtagtatctgttct 229  Q
    |||||||| |||||||||||||||||||||||| ||||||||||    
T  15758605 cctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

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