View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_287 (Length: 248)
Name: NF10140A_low_287
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_287 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 28747355 - 28747445
Alignment:
| Q |
143 |
gccgttactcattctgattactatttaacatgtaaatccaagtatctttgtaaagttataaacagtacaaaggaacaaactgcatatttat |
233 |
Q |
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| T |
28747355 |
gccgttactcattctgattactatttaacatgtaaatccaagtatctttgtaaagttataaacagtacaaaggaacaaactacatatttat |
28747445 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 28747224 - 28747279
Alignment:
| Q |
12 |
catcaccgttcttgaatctagaagaaacataaacaagaaaattaactatgataagc |
67 |
Q |
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| T |
28747224 |
catcaccgttcttgaatctagaagaaacataaacaagaaaattaactatgataagc |
28747279 |
T |
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