View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_29 (Length: 425)
Name: NF10140A_low_29
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 45682231 - 45681878
Alignment:
| Q |
20 |
ataagcttaattaaaggtatgtcctacaaa-gattaatatcacataatcccatggacaataatgccacacatttctttccttatgtaagtcatcttggct |
118 |
Q |
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| T |
45682231 |
ataagcttaattaaaggtatgtcctacaaaagattaatatcacataatcccatggacaataatgccacacatttctttccttatgtaagtcatcttggct |
45682132 |
T |
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| Q |
119 |
gcagaatataaatgggggaccaggggccacaattactaaaatttcnnnnnnnnnnnnnnnnnnnnnnnntatataaacaatcccagctcagcattgataa |
218 |
Q |
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| T |
45682131 |
gcagaatataaatgggggaccaggggccacaattactaaaatttccacatacacaaaaacacacacacatatataaacaatcccagctcagcattgataa |
45682032 |
T |
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| Q |
219 |
gacaaattaattataatatactgtacagcatattatacaagtgattttggattagatttgtctcaactattgtctgtctt-----gattattaggacggt |
313 |
Q |
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| T |
45682031 |
gacaaattaattataatatactgtacagcatattgtacaagtgattttggattagatttgtctcaactattgtctgtcttgatttgattattaggacggt |
45681932 |
T |
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| Q |
314 |
tcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
367 |
Q |
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| T |
45681931 |
tcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
45681878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 391 - 420
Target Start/End: Complemental strand, 45681824 - 45681795
Alignment:
| Q |
391 |
cagtccttcccatacatgcatgtttcttgt |
420 |
Q |
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| T |
45681824 |
cagtccttcccatacatgcatgtttcttgt |
45681795 |
T |
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