View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_293 (Length: 247)
Name: NF10140A_low_293
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_293 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 15648083 - 15648289
Alignment:
| Q |
13 |
ataaaattagaaacaaaatcaagtactaccggtgggcaacattagcatannnnnnngtgaaaatgaccggtgagccaacata--gtacacattttcttac |
110 |
Q |
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| T |
15648083 |
ataaaattaaaaacaaaatcaagtactaccggtgggcaacattagcatatttttttgtgaaaatgaccagtgagccaacatatagtacacattttcttac |
15648182 |
T |
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| Q |
111 |
actttttcaacatcacctatttcagtcctattgtgatcactattaatttgagacgcggtatatatatgacgtcttacgatttgtcgatgaataaaaagaa |
210 |
Q |
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| T |
15648183 |
actttttcaacatcacctatttcagtcctattgtgattactattaatttgagacgccgtatatatacgatgtcttacgatttgtcgattaataaaaagaa |
15648282 |
T |
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| Q |
211 |
cctgatt |
217 |
Q |
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||||||| |
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| T |
15648283 |
cctgatt |
15648289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 15648302 - 15648334
Alignment:
| Q |
213 |
tgatttgttaaaacatagaagaactcttctgat |
245 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
15648302 |
tgatttgttaaaacatagaagaactcttctgat |
15648334 |
T |
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