View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_294 (Length: 247)
Name: NF10140A_low_294
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_294 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 1411126 - 1410914
Alignment:
| Q |
20 |
catcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttga |
119 |
Q |
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| T |
1411126 |
catcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtatccgaatttga |
1411027 |
T |
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| Q |
120 |
atcaccaaagttataaattgcagggtacacacatttgctagagttactattgccattcttctcacttgagacttgaataaatgtacatgccacataaaga |
219 |
Q |
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| T |
1411026 |
atcaccaaagttataaattgcagggtacacacatttgctagagttactattgccattcttctcacttgagacttgaataaatgtacatgccacataaaga |
1410927 |
T |
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| Q |
220 |
ttgaaacaccaaa |
232 |
Q |
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||||||||||||| |
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| T |
1410926 |
ttgaaacaccaaa |
1410914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 1414502 - 1414366
Alignment:
| Q |
20 |
catcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttga |
119 |
Q |
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| T |
1414502 |
catcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttga |
1414403 |
T |
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| Q |
120 |
atcaccaaagttataaattgcagggtacacacatttg |
156 |
Q |
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| T |
1414402 |
gtcaccaaagttataaattgcagggtacacacatttg |
1414366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 1420048 - 1419917
Alignment:
| Q |
20 |
catcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttga |
119 |
Q |
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| T |
1420048 |
catcagaagctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtatctgaatttga |
1419952 |
T |
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| Q |
120 |
atcaccaaagttataaattgcagggtacacacatt |
154 |
Q |
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| T |
1419951 |
gtcaccaaagttataaattgcagggtacacacatt |
1419917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 1408244 - 1408109
Alignment:
| Q |
20 |
catcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttga |
119 |
Q |
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| T |
1408244 |
catcagaagctcttcctgtggtgcttccaaagtagcttataccattaggaggcgtaacagctgtgtatattgcatttgctgctccagtatctgaatttga |
1408145 |
T |
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| Q |
120 |
atcaccaaagttataaattgcagggtacacacattt |
155 |
Q |
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| T |
1408144 |
gtcaccaaaattgtaaattgcagggtactcacattt |
1408109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 1419912 - 1419863
Alignment:
| Q |
183 |
acttgagacttgaataaatgtacatgccacataaagattgaaacaccaaa |
232 |
Q |
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| T |
1419912 |
acttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaa |
1419863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 1414365 - 1414314
Alignment:
| Q |
181 |
tcacttgagacttgaataaatgtacatgccacataaagattgaaacaccaaa |
232 |
Q |
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| T |
1414365 |
tcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaa |
1414314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 3600632 - 3600507
Alignment:
| Q |
30 |
tcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaag |
129 |
Q |
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||||||||| ||| |||||||||||||||| || |||||| | |||| ||| | |||||||||| ||| ||||||||| ||||| || ||||||||| |
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| T |
3600632 |
tcttcctgagatgcttccaaagaagcttataccattaggatgctcaacagctgccattgttgcatatccagctccagtatctgaattggagtcaccaaag |
3600533 |
T |
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| Q |
130 |
ttataaattgcagggtacacacattt |
155 |
Q |
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|| || ||||| ||||| |||||||| |
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| T |
3600532 |
ttgtatattgctgggtagacacattt |
3600507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 14339499 - 14339374
Alignment:
| Q |
30 |
tcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaag |
129 |
Q |
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||||||||| ||| |||||||||||||||| || |||||| | | |||| ||| |||||||||| ||| ||||||||| ||||| || ||||||||| |
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| T |
14339499 |
tcttcctgagatgcttccaaagaagcttataccattaggatactcaacagctgccgttgttgcatatccagctccagtatctgaattggagtcaccaaag |
14339400 |
T |
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| Q |
130 |
ttataaattgcagggtacacacattt |
155 |
Q |
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|| || ||||| ||||| |||||||| |
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| T |
14339399 |
ttgtatattgctgggtagacacattt |
14339374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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