View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_298 (Length: 247)
Name: NF10140A_low_298
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_298 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30811438 - 30811678
Alignment:
| Q |
1 |
gctgcacaagcctaatagaattttgatgaccaaaattaatgtgacaaacttacttagcaaggttattagtgatatgtcctacattcatgtattttgttgt |
100 |
Q |
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| T |
30811438 |
gctgcacaagcctaatagaagtttgatgaccaaaattaatgtgacaaacttacttagcaaggttattagtgatatgtcctacattcatgtattttgttgt |
30811537 |
T |
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| Q |
101 |
gggctatggttatgccaataagcaccgttttacaatttgtacgggcactaatcctaaggtgcatgcaaaagagaaatatagataaaaacactcataacac |
200 |
Q |
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| T |
30811538 |
gggctatggttatgccaataagcaccgttttacaatttgtactggcactaatcctaaggtgcatgcaaaagagaaatatagataaaaacactcataacac |
30811637 |
T |
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| Q |
201 |
gacctattcctattgccctctcatgacgactacaactccaa |
241 |
Q |
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| T |
30811638 |
gacctattcctattgccctctcatgacgactacaactccaa |
30811678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 30820404 - 30820477
Alignment:
| Q |
5 |
cacaagcctaatagaattttgatgaccaaaattaatgt--gacaaacttacttagcaaggttattagtgatatg |
76 |
Q |
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| T |
30820404 |
cacaagcctaatagaagtttgatgaccacaatcaatgtatgacaaacatacttagaaaggttattagtgatatg |
30820477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 30815198 - 30815273
Alignment:
| Q |
6 |
acaagcctaatagaattttgatgaccaaaattaatgt---gacaaacttacttagcaaggttattagtgatatgtc |
78 |
Q |
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| T |
30815198 |
acaagcctaatagaagtttgatgaccacaatcaatgttatgacaaagagacttagcaaggttattagtgatatgtc |
30815273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 35375136 - 35375092
Alignment:
| Q |
152 |
tcctaaggtgcatgcaaa-agagaaatatagataaaaacactcat |
195 |
Q |
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| T |
35375136 |
tcctaaggtgcatgcaaatagagaaatatacataaaaacattcat |
35375092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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