View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_30 (Length: 420)
Name: NF10140A_low_30
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 32060460 - 32060103
Alignment:
| Q |
10 |
atgagatgaacacaaaggtcagaacaaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaag |
109 |
Q |
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| T |
32060460 |
atgagaagaacacaaaggtcagaacgaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaag |
32060361 |
T |
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| Q |
110 |
cattttattctttgagcccctcccatttccaaacattattccaagtagagatacatcaatgtgacatatcgtctaactactattgttaggaggaattttg |
209 |
Q |
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| T |
32060360 |
cattttattctttgagcccctcccatttccaaacattattccaagtagacatacatcaatgtgacacatcgtctaactactattgttaggaggaattttg |
32060261 |
T |
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| Q |
210 |
atacgcaaatcattagttttgataccattgttgagtcatgaggggagcccaatgaatcatcatgttggactaagagcaaacactcaagtgagtcaaacac |
309 |
Q |
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| T |
32060260 |
atacgcaaatcattagttttgataccattgttgagtcacgaggggagcccagtaaatcatcatgttggaccaagagcaaacactcaagtgagtcaaacac |
32060161 |
T |
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| Q |
310 |
taaatctttatttaaaattttaatacattagatatatcaatcttctcatttatgtgtt |
367 |
Q |
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| T |
32060160 |
tagatctttatttaaaattttaatacattagatatatcaatcttctcatttatatgtt |
32060103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 37258096 - 37258011
Alignment:
| Q |
75 |
tcttcaatccatcattataaagcaaccaaacaaagcattttattctttga-gcccctcccatttccaaacattattccaagtagag |
159 |
Q |
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|||||||||||| ||| ||||||| ||||| ||||||||||||| ||||| || |||| ||||| |||||||||||||| |||||| |
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| T |
37258096 |
tcttcaatccataattgtaaagcagccaaagaaagcattttattttttgaggctcctctcattttcaaacattattccaggtagag |
37258011 |
T |
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