View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_300 (Length: 247)
Name: NF10140A_low_300
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_300 |
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| [»] scaffold0043 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 34293320 - 34293101
Alignment:
| Q |
19 |
aacagagatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgaaagaatcatgccacgcgcgaggtgtttgtctcaaaccatata |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34293320 |
aacaaagatggatcacttaggcttgtacaaaacccaacaaagagaacgaatgccttgagagaatcatgccacgcgcgaggtgcttgtctcaaaccatata |
34293221 |
T |
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| Q |
119 |
tagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtataaattttcagttaattttacttgtaaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||| |
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| T |
34293220 |
tagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacatcttcagttaattttccttgtaaaaa |
34293121 |
T |
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| Q |
219 |
ggcattattgatgtccatct |
238 |
Q |
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||||||||||| ||||||| |
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| T |
34293120 |
ggcattattgacatccatct |
34293101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 24486564 - 24486783
Alignment:
| Q |
19 |
aacagagatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgaaagaatcatgccacgcgcgaggtgtttgtctcaaaccatata |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24486564 |
aacaaagatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgagagaatcatgccacgcgcgaggtgcttgtctcaaaccatata |
24486663 |
T |
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| Q |
119 |
tagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtataaattttcagttaattttacttgtaaaaa |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||| |
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| T |
24486664 |
tagctttcttaagcttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacatcttcagttaattttccttgtaaaaa |
24486763 |
T |
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| Q |
219 |
ggcattattgatgtccatct |
238 |
Q |
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| T |
24486764 |
ggcattattgacatccatct |
24486783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 24494898 - 24495117
Alignment:
| Q |
19 |
aacagagatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgaaagaatcatgccacgcgcgaggtgtttgtctcaaaccatata |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24494898 |
aacaaagatggatcacttaggcttgtacaaaacccaacatagagaacgaatgccttgagagaatcatgccacgcgcgaggtgcttgtctcaaaccatata |
24494997 |
T |
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| Q |
119 |
tagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtataaattttcagttaattttacttgtaaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||| |
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| T |
24494998 |
tagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacatcttcagttaattttccttgtaaaaa |
24495097 |
T |
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| Q |
219 |
ggcattattgatgtccatct |
238 |
Q |
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||||||||||| ||||||| |
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| T |
24495098 |
ggcattattgacatccatct |
24495117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 81833 - 81919
Alignment:
| Q |
81 |
atcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaa |
167 |
Q |
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||||||||| || ||||| || || || || ||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| |
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| T |
81833 |
atcatgccatgctcgaggagtctgccttaatccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaa |
81919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 224
Target Start/End: Original strand, 59037 - 59182
Alignment:
| Q |
79 |
gaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggtt |
178 |
Q |
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||||||||||| || ||||||| || | ||||||||| || |||||||| || || |||| ||| || |||| |||||| || || || ||||| || | |
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| T |
59037 |
gaatcatgccatgcacgaggtgcctgccacaaaccataaattgctttcttgagcttacaaatatgatgaggaaattcagaatggataaaacctgggggct |
59136 |
T |
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| Q |
179 |
gctgcatgtataaattttcagttaattttacttgtaaaaaggcatt |
224 |
Q |
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||||||| || | || ||||| ||||||| |||| || |||||||| |
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| T |
59137 |
gctgcatatacacatcttcagataattttccttgcaagaaggcatt |
59182 |
T |
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