View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_302 (Length: 247)

Name: NF10140A_low_302
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_302
NF10140A_low_302
[»] chr3 (3 HSPs)
chr3 (6-232)||(53984798-53985024)
chr3 (7-229)||(53971094-53971315)
chr3 (168-224)||(53071908-53071964)
[»] chr4 (1 HSPs)
chr4 (168-229)||(34036297-34036358)
[»] chr2 (1 HSPs)
chr2 (168-232)||(6688093-6688157)
[»] chr1 (1 HSPs)
chr1 (169-229)||(16163998-16164058)
[»] chr7 (3 HSPs)
chr7 (168-209)||(19935380-19935421)
chr7 (168-209)||(19966519-19966560)
chr7 (168-215)||(31014482-31014529)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 53984798 - 53985024
Alignment:
Q  6 actgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984798 actgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaag 53984897  T
Q  106 acgtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984898 acgtgtgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta 53984997  T
Q  206 tgttgaagcacgtctagcatccacttc 232  Q
    |||||||||||||||||||||||||||    
T  53984998 tgttgaagcacgtctagcatccacttc 53985024  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 53971094 - 53971315
Alignment:
Q  7 ctgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaaga 106  Q
    |||||||||||| || ||||||| ||||||||| |  |||||| |||||||||||||||||| ||| || ||||  ||||||| |||||| | | |||||    
T  53971094 ctgagatgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaaga 53971193  T
Q  107 cgtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggacta 205  Q
    | |||  ||||||| || ||||||||||||||||||| |||||||||||| |||||| | | | ||||||||||||||||||||||||||||| ||||||    
T  53971194 catgt--agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggacta 53971291  T
Q  206 tgttgaagcacgtctagcatccac 229  Q
    ||||  ||||||||||||||||||    
T  53971292 tgttagagcacgtctagcatccac 53971315  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 53071964 - 53071908
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagca 224  Q
    |||||| ||||||| ||||||||||||| || ||||| ||||||||||  |||||||    
T  53071964 aaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca 53071908  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 34036358 - 34036297
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac 229  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  ||||||||||||    
T  34036358 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccac 34036297  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 6688157 - 6688093
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttc 232  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  |||| ||||||||||    
T  6688157 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttc 6688093  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 16163998 - 16164058
Alignment:
Q  169 aacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac 229  Q
    |||||||||||||| |||||||| ||| ||||| || ||||||||||| ||||||||||||    
T  16163998 aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccac 16164058  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 209  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19935421 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19935380  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 209  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19966560 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19966519  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 31014529 - 31014482
Alignment:
Q  168 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagca 215  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  31014529 aaaccttatgaatgataagatgttgaagcttgggactgtgttgaagca 31014482  T

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