View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_304 (Length: 246)
Name: NF10140A_low_304
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_304 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 3586705 - 3586885
Alignment:
| Q |
22 |
ggacatgcttattcttcttaattgttcctgcattttctacatgct-atcttaactattcccgcattttttatttgtttatagatataagttatttttctt |
120 |
Q |
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| T |
3586705 |
ggacatgcttattcttcttaactgttcccgcattttctacatgtttatcttaact-ttcccgcattttttatttgcctatatatataagttattcttctt |
3586803 |
T |
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| Q |
121 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatcta |
202 |
Q |
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| T |
3586804 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttttcagatctgcaggtactattttttaccgcatcta |
3586885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 9789750 - 9789580
Alignment:
| Q |
33 |
ttcttcttaattgttcctgcattttctacatgct-atcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttccca |
131 |
Q |
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| T |
9789750 |
ttcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttccca |
9789651 |
T |
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| Q |
132 |
catctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatcta |
202 |
Q |
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| T |
9789650 |
catatcttcaacctagctgctgctgttgtcagacttttcagatctacaggtactatttttcactgcatcta |
9789580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 44504580 - 44504713
Alignment:
| Q |
44 |
tgttcctgcattttctacatgct-atcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttcccacatctcttcaa |
142 |
Q |
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| T |
44504580 |
tgttcccgcattttctacatgtttatctcaactgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttcccacatctcttcaa |
44504679 |
T |
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| Q |
143 |
cctagctgctgctgttgtcagacttctcagatct |
176 |
Q |
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| T |
44504680 |
cttagctgctgctgttgtcagacttttcagatct |
44504713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 31678513 - 31678617
Alignment:
| Q |
98 |
tatagatataagttatttttcttaaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgc |
197 |
Q |
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|||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| || |
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| T |
31678513 |
tatatatataagttattcttcttaaccgttcccacatcttttcaacctagctgctgctgttgtcagacttttcagatctacaggtacgatttttcaccgc |
31678612 |
T |
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| Q |
198 |
atcta |
202 |
Q |
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||||| |
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| T |
31678613 |
atcta |
31678617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 31678375 - 31678441
Alignment:
| Q |
22 |
ggacatgcttattcttcttaattgttcctgcattttctacatgc-tatcttaactattcccgcattt |
87 |
Q |
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|||||||||||| |||||||| |||||| ||||||||||||||| |||||||| | ||||||||||| |
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| T |
31678375 |
ggacatgcttatgcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattt |
31678441 |
T |
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