View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_306 (Length: 246)

Name: NF10140A_low_306
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_306
NF10140A_low_306
[»] chr8 (2 HSPs)
chr8 (18-246)||(9442537-9442765)
chr8 (24-246)||(24596933-24597155)
[»] chr6 (1 HSPs)
chr6 (18-246)||(27877154-27877382)
[»] chr4 (5 HSPs)
chr4 (18-246)||(30948628-30948856)
chr4 (18-246)||(42267547-42267775)
chr4 (18-246)||(48700266-48700494)
chr4 (24-246)||(2000535-2000757)
chr4 (18-68)||(21513658-21513708)
[»] chr3 (3 HSPs)
chr3 (18-246)||(5821720-5821948)
chr3 (18-246)||(2815708-2815936)
chr3 (24-246)||(42586601-42586823)
[»] chr2 (1 HSPs)
chr2 (18-246)||(827123-827351)
[»] chr5 (2 HSPs)
chr5 (18-246)||(41720054-41720282)
chr5 (18-246)||(34353654-34353882)
[»] chr7 (1 HSPs)
chr7 (18-246)||(8136908-8137132)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 9442765 - 9442537
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9442765 aatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 9442666  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
9442665 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 9442566  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    |||||||||||||||||||||||||||||    
9442565 agtaaatttaccattctgtgagcactgtg 9442537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 24597155 - 24596933
Alignment:
24 gtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagccaagaag 123  Q
    ||||||||||||||| ||||| ||||||  ||| ||||||||||| |||| |||||||||||||| ||  ||||||    ||| | ||| ||||||||||    
24597155 gtggtgatgaaagcaaaaaagctcacaaacaatctatacatgcttgtgggggatacattgcaagatgctaatgcattgactgctgtagcgagccaagaag 24597056  T
124 aaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaa 223  Q
    |||| || ||| |||||||||| | |||||||||||| || |||||||| |||||||  |||| |||||  ||||| || |  |||||||||||||| ||    
24597055 aaacgacaatggtgtggcatcataaactaggccatatatcggaacgtggtttgaaagctcttgaggaacaaaatcttctacctgggctcaagacagtgaa 24596956  T
224 tttaccattctgtgagcactgtg 246  Q
    |||  | ||||||||||||||||    
24596955 tttgtctttctgtgagcactgtg 24596933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 27877382 - 27877154
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27877382 aatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 27877283  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
27877282 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 27877183  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    |||||||||||||||||||||||||||||    
27877182 agtaaatttaccattctgtgagcactgtg 27877154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 30948856 - 30948628
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
30948856 aatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgcttctgggagatacattgcaagaggcggatgcatcggttgcagcagcaagcc 30948757  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30948756 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 30948657  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    |||||||||||||||||||||||||||||    
30948656 agtaaatttaccattctgtgagcactgtg 30948628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 42267547 - 42267775
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42267547 aatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 42267646  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
42267647 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 42267746  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    |||||||||||||||||||||||||||||    
42267747 agtaaatttaccattctgtgagcactgtg 42267775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 48700494 - 48700266
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48700494 aatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 48700395  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
48700394 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 48700295  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    |||||||||||||||||||||||||||||    
48700294 agtaaatttaccattctgtgagcactgtg 48700266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 2000535 - 2000757
Alignment:
24 gtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagccaagaag 123  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||| |||| |||| ||||||||| ||  ||||||    ||  | ||||||||||||||    
2000535 gtggtgatgaaagcagaaaagctcacaaataatctatacatgcttgtgggggatatattgcaagatgctaatgcattgactgttgtagcaagccaagaag 2000634  T
124 aaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaa 223  Q
    |||  || ||| |||||||||| | ||||||||||||||| |||| ||| |||||||  |||| |||||  ||||| || |  |||||||||||| | ||    
2000635 aaatgacaatggtgtggcatcacaaactaggccatatgtcggaacatggtttgaaagctcttgcggaacaaaatcttctacctgggctcaagacaatgaa 2000734  T
224 tttaccattctgtgagcactgtg 246  Q
    |||  | ||||||||||||||||    
2000735 tttgtctttctgtgagcactgtg 2000757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 21513708 - 21513658
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgctt 68  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||    
21513708 aatcttgtggtgataaaagcagaaaagatgacaagtaatttatacatgctt 21513658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 5821948 - 5821720
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5821948 aatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 5821849  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
5821848 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 5821749  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    |||||||||||||||||||||||||||||    
5821748 agtaaatttaccattctgtgagcactgtg 5821720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 2815936 - 2815708
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
2815936 aatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgcttctgggagatacattgcaagaggcggatacatcagttgcagcagcaagcc 2815837  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||  |    
2815836 aagaagaaacaatgatgacgtggcatcaaagactaggccatatgtcataacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaattc 2815737  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    ||||||||||||||| |||||||||||||    
2815736 agtaaatttaccattttgtgagcactgtg 2815708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 42586601 - 42586823
Alignment:
24 gtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagccaagaag 123  Q
    ||||||||||||||||||||| |||| |  ||| ||||||||||| |||| |||||||||||||| ||  ||||||    ||| | ||| ||||||||||    
42586601 gtggtgatgaaagcagaaaagctcactaacaatctatacatgcttgtgggggatacattgcaagacgctaatgcattgactgctgtagcgagccaagaag 42586700  T
124 aaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaa 223  Q
    |||| || ||| |||||||||| | ||||||||||||||| |||||||| |||||||  |||| |||||  ||||| || |  |||||||||||| | ||    
42586701 aaacgacaatggtgtggcatcataaactaggccatatgtcggaacgtggtttgaaagctcttgcggaacaaaatcttctacctgggctcaagacaatgaa 42586800  T
224 tttaccattctgtgagcactgtg 246  Q
    |||  | ||||||||||||||||    
42586801 tttgtctttctgtgagcactgtg 42586823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 827123 - 827351
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
827123 aatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgcttctgggagatacattgcaagaggaggatgcatcagttgcagcagcaagcc 827222  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
827223 aagaagaaacaacgatgatgtgacatcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 827322  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    |||||||||||||||||||||||||||||    
827323 agtaaatttaccattctgtgagcactgtg 827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 41720054 - 41720282
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||    
41720054 aatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgcttctgggagatacgttgcaagaggccgatgcatcagttgcagcatcaagcc 41720153  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
41720154 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaaggc 41720253  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    ||||||||||||||| |||||||||||||    
41720254 agtaaatttaccattttgtgagcactgtg 41720282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 34353654 - 34353882
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaagaggcggatgcatcagttgcagcagcaagcc 117  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||  |||||||||||||||||| ||||||    
34353654 aatcttgtggtgataaaagcagaaaagatcacaagtaatctatacatgcttctaggggatacgttgcaagaggtcgatgcatcagttgcagcatcaagcc 34353753  T
118 aagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagac 217  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |    
34353754 aagaagaaacagcgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaagtccttgctgaacgcaatctccttcacgggctcaaggc 34353853  T
218 agtaaatttaccattctgtgagcactgtg 246  Q
    ||||||||||||||| |||||||||||||    
34353854 agtaaatttaccattttgtgagcactgtg 34353882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 8137132 - 8136908
Alignment:
18 aatcttgtggtgatgaaagcagaaaagatcacaagtaatttatacatgcttctgggagatacattgcaaga---ggcggatgcatcagttgcagcagcaa 114  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||         ||||||  | |   ||||||||||||| ||||||  ||||    
8137132 aatcttgtggtgatgaaagaagaaaatatcacaagtaatctatacatgctt---------acattgttatattaggcggatgcatcaattgcagttgcaa 8137042  T
115 gccaagaagaaacaacgatgatgtggcatcaaagactaggccatatgtcagaacgtggcttgaaa-gtccttgtggaacgcaatctcc-ttcacgggctc 212  Q
    ||||| |||||||||||||||||||| |||  | |||||||||||| | |||| |||||| ||||  || ||| |||||||||||||| ||||| ||||     
8137041 gccaaaaagaaacaacgatgatgtggtatcgcaaactaggccatatattagaatgtggctggaaatttctttgcggaacgcaatctcctttcacaggctg 8136942  T
213 aagacagtaaatttaccattctgtgagcactgtg 246  Q
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8136941 aagacggtaaacttaccattctgtgagcactgtg 8136908  T

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