View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_31 (Length: 418)
Name: NF10140A_low_31
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 14240849 - 14241251
Alignment:
| Q |
1 |
tcattaagggttggaccactagtatatgttgtacctaaattccctttatccatcaaaaggaaacaaaaaggaataaccgccctggatagataaatttcaa |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240849 |
tcattaagggttggaccactagtatatgttgaacctaaattccctttatccatcaaaaggaaacaaaaaggaataaccgccctggatagataaatttcaa |
14240948 |
T |
|
| Q |
101 |
ttgtaacatgttgattatgttttaaaaaggaataacgcactaataaacatataaccgttgtagagggggctaaggctagtaggatatttgcagccaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240949 |
ttgtaacatgttgattatgttttaaaaaggaataacgcactaataaacatataaccgttgtagagggggctaaggctagtaggatatttgcagccaataa |
14241048 |
T |
|
| Q |
201 |
gacttgagagaccaaaacaaaaactatgaagtcttactatcatctctacgtacataactaaaaactctcctctcactttcaccacagttgcgcctccagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14241049 |
gacttgagagaccaaaacaaaaactatgaagtcttactatcatctctacgtacataactaaaaactctcctctcactttcaccacagttgcgcctccagc |
14241148 |
T |
|
| Q |
301 |
gaccaatcgttttgcaatccagctttcagcgccatttctggggaagttttctgatctgtttcagccactttcagctgttttctacaaactaagttcctcc |
400 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14241149 |
gaccaatcgttttgcaatccagctttcggcaccatttctggggaagttttctgatctgtttcagccactttcagctgttttctacaaactaagttcctcc |
14241248 |
T |
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| Q |
401 |
cat |
403 |
Q |
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| T |
14241249 |
cat |
14241251 |
T |
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