View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_312 (Length: 245)
Name: NF10140A_low_312
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_312 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 48623181 - 48623410
Alignment:
| Q |
1 |
ggggaaatagtatatactcgtaaaagaagataattgcatatttgaaaaaggatctcctgcggtccgttttggatttagtatatgatgaatatgtgaaagg |
100 |
Q |
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| T |
48623181 |
ggggaaagagtatatactcgtaaaagaagatatatgcttatttgaagaaggatctcctgcggtccgttttggatttagtatatgatgaatatgtgacagg |
48623280 |
T |
|
| Q |
101 |
tttgctttattcnnnnnnnnnnnnnngaagtgacaggtttgctaataaattacgtcattgtccatttgctgttagaaagacgaagaattaacatannnnn |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48623281 |
tttgctttattcaaaaaaaaaaaa---aagtgacaggtttgctaataaattacgtcattgtccatttgctgttagaaagacgaagaattaacatattttt |
48623377 |
T |
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| Q |
201 |
nngacagagaaaggcaatgaaattaatcatatt |
233 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
48623378 |
ttgacagagaaaggcaatgaaattaatcatatt |
48623410 |
T |
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