View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_318 (Length: 243)

Name: NF10140A_low_318
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_318
NF10140A_low_318
[»] chr4 (1 HSPs)
chr4 (23-243)||(1045608-1045813)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 1045813 - 1045608
Alignment:
Q  23 ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcacacacacagaat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  1045813 ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcaca--cacagaat 1045716  T
Q  123 gtttgccaaaaataacaaataacaagataaattgaaaaaattaggagcacaaaacgtgattacaatgagttatttattatacttgttaatcgaatagatt 222  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||    
T  1045715 gtttgccaaaaataacagataacaagataaattgaaaaaattaggagc-------------acaatgagttatttattatacttgttaatcgaatagatt 1045629  T
Q  223 caaacagtgaagaaaagatcg 243  Q
    |||||||||||||||||||||    
T  1045628 caaacagtgaagaaaagatcg 1045608  T

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