View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_32 (Length: 415)

Name: NF10140A_low_32
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_32
NF10140A_low_32
[»] chr4 (5 HSPs)
chr4 (2-336)||(47513300-47513641)
chr4 (297-335)||(50944882-50944920)
chr4 (25-78)||(56049886-56049939)
chr4 (25-79)||(33950145-33950200)
chr4 (25-64)||(5654601-5654641)
[»] chr8 (1 HSPs)
chr8 (36-79)||(34073973-34074016)
[»] chr6 (1 HSPs)
chr6 (25-59)||(34547221-34547255)
[»] chr5 (2 HSPs)
chr5 (36-74)||(16881157-16881195)
chr5 (25-70)||(14818307-14818352)
[»] chr3 (2 HSPs)
chr3 (27-60)||(4216474-4216507)
chr3 (25-80)||(20691328-20691384)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 336
Target Start/End: Original strand, 47513300 - 47513641
Alignment:
Q  2 cagagaccagacacagtcacgtcaataatttgagaaatgacataatttaatgtaatcatacgtatcggtatcagacacaatctgtatcggacacacgaac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |||    
T  47513300 cagagaccagacacagtcacgtcaataatttgagaaatgacataatttaatgtaatcatacgtgtcggtatcagacacaatctgtatcggacccagaaac 47513399  T
Q  102 acgcctaatccgaggaataaacgcaaagagacgagtgaaacatttttgacattatact----catccataatattcaacaagaacaaaaacaccatgaaa 197  Q
    | ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  47513400 atgcctaatccgaggaataaacgtaaagagacaggtgaaacatttttgacattatactcatccatccataatattcaacaagaacaaaaacaccatgaaa 47513499  T
Q  198 gaaaga---agnnnnnnncctgcatcatgaacgacactagtacgagggatagagttaggagagtgtctagaagtagagggtttacaaacaccacgtttaa 294  Q
    ||||||   |        |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  47513500 gaaagaaagaaaaaaaaacctgcatcatgaacgacactagtacgagggatagtgttaggagagtgtctagaagcagagggtttacaaacaccacgtttaa 47513599  T
Q  295 ggacagaccaacatccacacttattgttatccatctccatgc 336  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47513600 ggacagaccaacatccacacttattgttatccatctccatgc 47513641  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 50944882 - 50944920
Alignment:
Q  297 acagaccaacatccacacttattgttatccatctccatg 335  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50944882 acagaccaacatccacacttattgttatccatctccatg 50944920  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 56049886 - 56049939
Alignment:
Q  25 aataatttgagaaatgacataatttaatgtaatcatacgtatcggtatcagaca 78  Q
    ||||||||||||||||||||| || |||||||||||| || ||||| |||||||    
T  56049886 aataatttgagaaatgacatagttcaatgtaatcatatgtgtcggtgtcagaca 56049939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 33950145 - 33950200
Alignment:
Q  25 aataatttgagaaa-tgacataatttaatgtaatcatacgtatcggtatcagacac 79  Q
    |||||||||||||| | ||||||||||||||||||||| || ||||| ||||||||    
T  33950145 aataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacac 33950200  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 5654641 - 5654601
Alignment:
Q  25 aataatttgagaaa-tgacataatttaatgtaatcatacgt 64  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  5654641 aataatttgagaaaatgacataattcaatgtaatcatacgt 5654601  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 34074016 - 34073973
Alignment:
Q  36 aaatgacataatttaatgtaatcatacgtatcggtatcagacac 79  Q
    |||||||||||||||||||||||||| || ||| ||||||||||    
T  34074016 aaatgacataatttaatgtaatcataagtgtcgatatcagacac 34073973  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 34547255 - 34547221
Alignment:
Q  25 aataatttgagaaatgacataatttaatgtaatca 59  Q
    |||||||||| ||||||||||||||||||||||||    
T  34547255 aataatttgaaaaatgacataatttaatgtaatca 34547221  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 16881157 - 16881195
Alignment:
Q  36 aaatgacataatttaatgtaatcatacgtatcggtatca 74  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  16881157 aaatgacataatttaatgtaatcatatgtatctgtatca 16881195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 14818352 - 14818307
Alignment:
Q  25 aataatttgagaaatgacataatttaatgtaatcatacgtatcggt 70  Q
    |||||||||||||||||||||||| ||||||| |||| || |||||    
T  14818352 aataatttgagaaatgacataattcaatgtaaacatatgtgtcggt 14818307  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 4216507 - 4216474
Alignment:
Q  27 taatttgagaaatgacataatttaatgtaatcat 60  Q
    |||||||||||||||||||||| |||||||||||    
T  4216507 taatttgagaaatgacataattcaatgtaatcat 4216474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 20691328 - 20691384
Alignment:
Q  25 aataatttgagaaa-tgacataatttaatgtaatcatacgtatcggtatcagacaca 80  Q
    |||||||||||||| |||||||||| | |||||||||| || ||||| |||||||||    
T  20691328 aataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacaca 20691384  T

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