View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_323 (Length: 241)

Name: NF10140A_low_323
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_323
NF10140A_low_323
[»] chr6 (10 HSPs)
chr6 (22-223)||(26975524-26975725)
chr6 (26-223)||(26636219-26636416)
chr6 (26-223)||(26742185-26742382)
chr6 (22-223)||(26950316-26950517)
chr6 (22-223)||(26959699-26959900)
chr6 (22-206)||(27664613-27664797)
chr6 (22-223)||(26849285-26849486)
chr6 (25-223)||(25074443-25074638)
chr6 (115-223)||(31288878-31288986)
chr6 (22-78)||(31288986-31289042)
[»] chr2 (1 HSPs)
chr2 (25-223)||(17992626-17992824)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 26975725 - 26975524
Alignment:
Q  22 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  26975725 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag 26975626  T
Q  122 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 221  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26975625 atttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattc 26975526  T
Q  222 at 223  Q
    ||    
T  26975525 at 26975524  T

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Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 26636416 - 26636219
Alignment:
Q  26 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 125  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26636416 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26636317  T
Q  126 gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcat 223  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26636316 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcat 26636219  T

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Target: chr6; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 26742382 - 26742185
Alignment:
Q  26 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 125  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26742382 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26742283  T
Q  126 gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcat 223  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26742282 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcat 26742185  T

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Target: chr6; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 26950517 - 26950316
Alignment:
Q  22 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 121  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| |||||||||||||||||||    
T  26950517 agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag 26950418  T
Q  122 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 221  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950417 atttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 26950318  T
Q  222 at 223  Q
    ||    
T  26950317 at 26950316  T

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Target: chr6; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 26959900 - 26959699
Alignment:
Q  22 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 121  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| ||||||| |||||||||||    
T  26959900 agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag 26959801  T
Q  122 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 221  Q
    ||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||    
T  26959800 atttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttcaataaaatcacgttcatactc 26959701  T
Q  222 at 223  Q
    ||    
T  26959700 at 26959699  T

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Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 27664613 - 27664797
Alignment:
Q  22 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 121  Q
    ||||||||||||||||  || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||    
T  27664613 agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag 27664712  T
Q  122 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaa 206  Q
    ||| ||||||||| ||||| ||||||||||||| | ||    |||||||||||| |||||||||||||||||||| |||||||||    
T  27664713 attcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaa 27664797  T

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Target: chr6; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 26849486 - 26849285
Alignment:
Q  22 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 121  Q
    |||||||| || |||||||| ||||||||||||||||||||| |  ||||||||||| ||||  |||| ||||||||||| |||||||||||||||||||    
T  26849486 agtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgag 26849387  T
Q  122 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 221  Q
    |||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| ||  ||||||||||  ||||||||| | ||||||||||    
T  26849386 atttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcatattc 26849287  T
Q  222 at 223  Q
    ||    
T  26849286 at 26849285  T

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Target: chr6; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 25074638 - 25074443
Alignment:
Q  25 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 124  Q
    |||||||| |||||||| |||||||||| ||||||||||||| | |||||||   || | ||||||||||||||||| ||||||||||| |||||||||     
T  25074638 gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagatc 25074542  T
Q  125 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcat 223  Q
      || ||||| |||||||||| |||||||| |||||  ||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||    
T  25074541 gaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaactattttttcaataaaatcacgttcatattcat 25074443  T

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Target: chr6; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 31288986 - 31288878
Alignment:
Q  115 attcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgtt 214  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| ||||    
T  31288986 attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt 31288887  T
Q  215 catattcat 223  Q
    |||||||||    
T  31288886 catattcat 31288878  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
Q  22 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca 78  Q
    |||||||| |||||| |||| ||||||||||| |||||||||||| |||||||||||    
T  31289042 agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca 31288986  T

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Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 17992626 - 17992824
Alignment:
Q  25 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 124  Q
    |||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || |  |||||||||||||||| ||||||||||||||||||||||    
T  17992626 gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt 17992725  T
Q  125 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcat 223  Q
    |||| ||||  |||||||| ||||||||||  ||||||||||| ||||||| |||   ||||||||||||||||||||||||||| |||||||||||||    
T  17992726 tgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttcaataaaatcacgttcatattcat 17992824  T

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