View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_327 (Length: 241)
Name: NF10140A_low_327
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_327 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 55890431 - 55890641
Alignment:
| Q |
8 |
cagagatttgtatacttacagtgcaatgattgcagcttttgctgagcatgggaaatcacaagatgctatagatcttttcttgaagatgcagcaggaaggt |
107 |
Q |
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| T |
55890431 |
cagagatttgtatacttacagtgcaatgattgcagcttttgctgagcatgggaaatcacaagatgctatagatcttttcttgaagatgcagcaggaaggt |
55890530 |
T |
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| Q |
108 |
ataaagccaaaccaagttacatttgttggggtcctcaatgcatgtagcacttcaggtctgattgaggaaggttgtaggttttttcagattatgactggga |
207 |
Q |
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| T |
55890531 |
ttaacgccaaaccaagttacatttgttggggtcctcaatgcatgtagcacttcaggtctaattgaggaaggttgtaggttttttcagattatgactgggg |
55890630 |
T |
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| Q |
208 |
tgtttggtatt |
218 |
Q |
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| T |
55890631 |
tgtatggtatt |
55890641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 1031474 - 1031264
Alignment:
| Q |
8 |
cagagatttgtatacttacagtgcaatgattgcagcttttgctgagcatgggaaatcacaagatgctatagatcttttcttgaagatgcagcaggaaggt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1031474 |
cagagatttgtatacttacagtgcaatgattgcagcttttgctgagcacgggaaatcacaagatgctatagatcttttcttgaagatgcagcaggaaggt |
1031375 |
T |
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| Q |
108 |
ataaagccaaaccaagttacatttgttggggtcctcaatgcatgtagcacttcaggtctgattgaggaaggttgtaggttttttcagattatgactggga |
207 |
Q |
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| T |
1031374 |
ttaaagccaaaccaagttacatttgttggggtcctcaatgcatgtagcacttcaggtctaattgaggaaggttgtaggttttttcagattatgactgaga |
1031275 |
T |
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| Q |
208 |
tgtttggtatt |
218 |
Q |
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| T |
1031274 |
tgtatggtatt |
1031264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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