View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_333 (Length: 240)
Name: NF10140A_low_333
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_333 |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 16885606 - 16885524
Alignment:
| Q |
152 |
catagatcacaaattgagcttcaaagatagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttctatgat |
234 |
Q |
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| T |
16885606 |
catagatcacaaattgagcttgacagatagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttccatgat |
16885524 |
T |
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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 47399857 - 47399775
Alignment:
| Q |
152 |
catagatcacaaattgagcttcaaagatagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttctatgat |
234 |
Q |
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| T |
47399857 |
catagatcacaaattgagcttgacagatagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttccatgat |
47399775 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 31588707 - 31588627
Alignment:
| Q |
154 |
tagatcacaaattgagcttcaaagatagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttctatgat |
234 |
Q |
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| T |
31588707 |
tagatcacaaattgagcttccaagatagcatgtaaagtgacacaaaataaaatattagctcaaataacactcttccatgat |
31588627 |
T |
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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 3554107 - 3554025
Alignment:
| Q |
152 |
catagatcacaaattgagcttcaaagatagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttctatgat |
234 |
Q |
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| T |
3554107 |
catagatcacaaattgagcttgacagatagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttccatgat |
3554025 |
T |
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Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 42225116 - 42225198
Alignment:
| Q |
152 |
catagatcacaaattgagcttcaaagatagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttctatgat |
234 |
Q |
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||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42225116 |
catagatcacaaattgagcttgacagatagcatgtaaaatgacacaaaatgaaatattagctcaaataacactcttccatgat |
42225198 |
T |
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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 20275415 - 20275497
Alignment:
| Q |
152 |
catagatcacaaattgagcttcaaagatagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttctatgat |
234 |
Q |
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| T |
20275415 |
catagatcacaaattgagcttgacagatagcatgtaaagtgatacaaaatgaaatattagctcaaataacactcttccatgat |
20275497 |
T |
|
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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 25888475 - 25888530
Alignment:
| Q |
179 |
tagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttctatgat |
234 |
Q |
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| T |
25888475 |
tagcatgtaaagtgacacaaaatgaaatattagctcaaataacactcttccatgat |
25888530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 26323714 - 26323682
Alignment:
| Q |
106 |
agaaatgtgactgttataactatgtctatgcat |
138 |
Q |
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| T |
26323714 |
agaaatgtgactgttataactatgactatgcat |
26323682 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 22386040 - 22385990
Alignment:
| Q |
184 |
tgtaaagtgacacaaaatgaaatattagctcaaataacactcttctatgat |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
22386040 |
tgtaaagtgacacaaaatgaaatattagctcaaataacattcttccatgat |
22385990 |
T |
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