View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_334 (Length: 240)
Name: NF10140A_low_334
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_334 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 35425755 - 35425978
Alignment:
| Q |
10 |
acctcttgagattcagcatcacatagttagtgatccttcttgccctaggtgtgtggaacatc-----------acaccttgcaagattgtccaaaagcaa |
98 |
Q |
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| T |
35425755 |
acctcttgagattcagcatcacatagttagtgatccttcttgccctaggtgtgtggaacatccatggaacttcacaccttgcaagattgtccaaaagcaa |
35425854 |
T |
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| Q |
99 |
atgtgaatccgaaagcttttcaattttttgaatactcaagtatttgatcatgttagttataacttgataaaaattttggtgccttcctattctgtgatga |
198 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35425855 |
atgtgaatccgaaagcttttgaattttttgaatattcaagtatttgatcatgttagttataacttgattaaaattttggtgccttcctattctgtgatga |
35425954 |
T |
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| Q |
199 |
aattagaaacgtttttactcctct |
222 |
Q |
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|||||||||||||||||||||||| |
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| T |
35425955 |
aattagaaacgtttttactcctct |
35425978 |
T |
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