View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_336 (Length: 240)

Name: NF10140A_low_336
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_336
NF10140A_low_336
[»] chr1 (1 HSPs)
chr1 (20-222)||(52214822-52215024)
[»] chr6 (2 HSPs)
chr6 (20-222)||(4161542-4161744)
chr6 (20-222)||(4223162-4223364)
[»] chr3 (1 HSPs)
chr3 (27-193)||(2220689-2220855)
[»] chr7 (9 HSPs)
chr7 (24-193)||(38283870-38284039)
chr7 (24-186)||(38155443-38155605)
chr7 (48-163)||(38288049-38288164)
chr7 (46-193)||(36741575-36741722)
chr7 (44-186)||(38191922-38192064)
chr7 (48-95)||(42800693-42800740)
chr7 (48-185)||(38146731-38146868)
chr7 (47-179)||(35096614-35096746)
chr7 (47-95)||(42835364-42835412)
[»] chr4 (1 HSPs)
chr4 (61-192)||(21362333-21362464)
[»] chr2 (4 HSPs)
chr2 (61-192)||(23906105-23906236)
chr2 (24-148)||(12408046-12408170)
chr2 (24-148)||(12420106-12420230)
chr2 (153-193)||(12407223-12407263)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 52215024 - 52214822
Alignment:
Q  20 tcataggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcc 119  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||    
T  52215024 tcataggcaaagaagagaacatggaaagttttttcataattatttgaaatatgtcgagttacgtggttgtgtttgcaccatggatgtgattgagttagcc 52214925  T
Q  120 cgtcatctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagattgactaaaacctcaaaat 219  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52214924 cgtcatctactgaggaatgtgaattcgctcaagcaaattacttttagttcttgtgacaaattctatataggtgccaaaagattgactaaaacctcaaaat 52214825  T
Q  220 att 222  Q
    |||    
T  52214824 att 52214822  T

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Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 4161744 - 4161542
Alignment:
Q  20 tcataggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcc 119  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||    
T  4161744 tcataggcaaagaagagaacatggaaagttttttcataattatttgaaatatgtcgagttacgtggttgtgtttgcaccatggacgtgattgagttagcc 4161645  T
Q  120 cgtcatctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagattgactaaaacctcaaaat 219  Q
     |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4161644 agtcatctattgaggaatgtgaattcgctcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagatggactaaaacctcaaaat 4161545  T
Q  220 att 222  Q
    |||    
T  4161544 att 4161542  T

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Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 4223364 - 4223162
Alignment:
Q  20 tcataggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcc 119  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||    
T  4223364 tcataggcaaagaagagaacatggaaagttttttcataattatttgaaatatgtcgagttacgtggttgtgtttgcaccatggacgtgattgagttagcc 4223265  T
Q  120 cgtcatctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagattgactaaaacctcaaaat 219  Q
     |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4223264 agtcatctattgaggaatgtgaattcgctcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagatggactaaaacctcaaaat 4223165  T
Q  220 att 222  Q
    |||    
T  4223164 att 4223162  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 2220855 - 2220689
Alignment:
Q  27 caaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatc 126  Q
    |||||||||||| ||| |  ||||| |||||||||||||||||||||||||||| | |||||| | ||||||||  |||| ||||| ||  || |||| |    
T  2220855 caaagaagagaatatgcagggttttctcataattatttgaaatatgttgagttacgaggttgtatgtgcaccataaatgtaattgaattggccagtcacc 2220756  T
Q  127 tactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgc 193  Q
    || ||||||||||||||||||| || |||||||||||||||||| |||| |||||||| | ||||||    
T  2220755 tattgaggaatgtgaattcacttaaacaaattactttcagttctcgtgaaaaattctacagaggtgc 2220689  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 38284039 - 38283870
Alignment:
Q  24 aggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtc 123  Q
    ||||||||||||||| ||| |  ||||| ||||||| ||||||||||||||||||||  ||| ||| | ||| ||||  |||| ||||||||  |  |||    
T  38284039 aggcaaagaagagaatatgcagggttttctcataatgatttgaaatatgttgagttacatggctgtatgtgcgccataaatgtaattgagttggctagtc 38283940  T
Q  124 atctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgc 193  Q
    |  || ||||||||||||||||||| || |||||||| |||||| || |||| |||||||| | ||||||    
T  38283939 acatattgaggaatgtgaattcacttaaacaaattacattcagtcctggtgaaaaattctacagaggtgc 38283870  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 38155605 - 38155443
Alignment:
Q  24 aggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtc 123  Q
    |||||||||||| | |||| ||| |||| ||||||| | ||||||||||| || ||  |||||||||||||| ||||  || | ||||||||| |  |||    
T  38155605 aggcaaagaagaaatcatgcaaaattttgtcataatgagttgaaatatgtagactttcgtggttgtgtttgctccataaatataattgagttagctagtc 38155506  T
Q  124 atctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctata 186  Q
    | ||| ||||||| |  ||||| || ||||||||||||||  ||||| |||||||||||||||    
T  38155505 agctattgaggaaagcaaattctcttaagcaaattacttttggttctagtgacaaattctata 38155443  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 38288049 - 38288164
Alignment:
Q  48 ttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattcac 147  Q
    |||||||| ||| |||||| |||  | |||||| ||||||||||||| |||||| | || ||||||||| |  |||||||| |||||||||||||||| |    
T  38288049 ttttttcacaatgatttgagatacatggagttacgtggttgtgtttgtaccatgaaagtaattgagttagcaagtcatctattgaggaatgtgaattcgc 38288148  T
Q  148 tcaagcaaattacttt 163  Q
    | || |||||||||||    
T  38288149 ttaatcaaattacttt 38288164  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 36741722 - 36741575
Alignment:
Q  46 agttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattc 145  Q
    |||||| ||||||| ||||||||||||| |||||  |||||||||||| | |   |||||| ||||| ||| |  |||| ||| |||||||||  |||||    
T  36741722 agttttctcataatgatttgaaatatgtggagttttgtggttgtgttttctctgcggatgttattgaattagcaagtcaactattgaggaatgcaaattc 36741623  T
Q  146 actcaagcaaattactttcagttcttgtgacaaattctatataggtgc 193  Q
     || ||  |||| ||||||||||||  | |||||||||||||||||||    
T  36741622 gcttaacaaaatgactttcagttctcttcacaaattctatataggtgc 36741575  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 38192064 - 38191922
Alignment:
Q  44 aaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaat 143  Q
    |||||||||||||||| |||||||||||||||||||| |||||||   |||| |||   |||| ||||||||| |  ||||  |  | ||||| |  |||    
T  38192064 aaagttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttaactagtcacatgttaaggaaagcaaat 38191965  T
Q  144 tcactcaagcaaattactttcagttcttgtgacaaattctata 186  Q
    ||||| ||| ||||||| ||||||||| || ||||||||||||    
T  38191964 tcacttaagaaaattacattcagttctcgttacaaattctata 38191922  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 42800693 - 42800740
Alignment:
Q  48 ttttttcataattatttgaaatatgttgagttaagtggttgtgtttgc 95  Q
    |||||||||||| ||||||||||||| |||||  ||||||||||||||    
T  42800693 ttttttcataatgatttgaaatatgtggagtttcgtggttgtgtttgc 42800740  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 38146868 - 38146731
Alignment:
Q  48 ttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattcac 147  Q
    |||||||||||| | ||||||||||| |||||| |||||||| ||||  ||||  |||| ||||||||| |  |  ||||| | || || |  |||| ||    
T  38146868 ttttttcataatgacttgaaatatgtagagttatgtggttgtatttgttccataaatgtaattgagttagctagcaatctattaagaaacgcaaatttac 38146769  T
Q  148 tcaagcaaattactttcagttcttgtgacaaattctat 185  Q
    | || ||||||||||| |||||| |||| |||||||||    
T  38146768 ttaaacaaattacttttagttctcgtgaaaaattctat 38146731  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 35096746 - 35096614
Alignment:
Q  47 gttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattca 146  Q
    ||||| ||||||  |||||||||||||||| ||  ||||||||||| || | ||  |||| ||||||||| |  ||||  || |||||| ||  ||||||    
T  35096746 gttttctcataacgatttgaaatatgttgaattccgtggttgtgttggctctataaatgttattgagttagctagtcacttattgaggagtgcaaattca 35096647  T
Q  147 ctcaagcaaattactttcagttcttgtgacaaa 179  Q
    || | | |||| |||||||||||| ||||||||    
T  35096646 cttaggaaaatgactttcagttctcgtgacaaa 35096614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 42835364 - 42835412
Alignment:
Q  47 gttttttcataattatttgaaatatgttgagttaagtggttgtgtttgc 95  Q
    ||||||||||||| ||||||||||||| || ||  ||||||||||||||    
T  42835364 gttttttcataatgatttgaaatatgtggatttttgtggttgtgtttgc 42835412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 21362464 - 21362333
Alignment:
Q  61 atttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattcactcaagcaaattac 160  Q
    ||||||||||||||||| || |||| |  |||||||| ||  |||||||||| ||  |  |||| ||| |||| ||||||||||| || |||||||||||    
T  21362464 atttgaaatatgttgagctatgtggatcagtttgcactataaatgtgattgacttggctagtcacctaatgagaaatgtgaattcgcttaagcaaattac 21362365  T
Q  161 tttcagttcttgtgacaaattctatataggtg 192  Q
    ||| | || |||||||||||| |||| |||||    
T  21362364 ttttaatttttgtgacaaattttatagaggtg 21362333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 23906105 - 23906236
Alignment:
Q  61 atttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattcactcaagcaaattac 160  Q
    ||||||||||||||||| || |||| |  |||||||| ||  |||||||||| ||  |  |||| ||| |||| ||||||||||| || |||||||||||    
T  23906105 atttgaaatatgttgagctatgtggatcagtttgcactataaatgtgattgacttggctagtcacctaatgagaaatgtgaattcgcttaagcaaattac 23906204  T
Q  161 tttcagttcttgtgacaaattctatataggtg 192  Q
    ||| | || |||||||||||| |||| |||||    
T  23906205 ttttaatttttgtgacaaattttatagaggtg 23906236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 12408170 - 12408046
Alignment:
Q  24 aggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtc 123  Q
    ||||||||||||||| ||| |  | ||| |||||||  |||||||||||||||| || |||| | ||||||||||||  |||  ||||||||| || ||     
T  12408170 aggcaaagaagagaatatgcagggatttctcataatgctttgaaatatgttgagctacgtggctctgtttgcaccataaatgcaattgagttagccagta 12408071  T
Q  124 atctactgaggaatgtgaattcact 148  Q
    |  || |||||||||||||||||||    
T  12408070 acatattgaggaatgtgaattcact 12408046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 12420230 - 12420106
Alignment:
Q  24 aggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtc 123  Q
    ||||||||||||||| ||| |  | ||| |||||||  |||||||||||||||| || |||| | ||||||||||||  |||  ||||||||| || ||     
T  12420230 aggcaaagaagagaatatgcagggatttctcataatgctttgaaatatgttgagctacgtggctctgtttgcaccataaatgcaattgagttagccagta 12420131  T
Q  124 atctactgaggaatgtgaattcact 148  Q
    |  || |||||||||||||||||||    
T  12420130 acatattgaggaatgtgaattcact 12420106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 12407263 - 12407223
Alignment:
Q  153 caaattactttcagttcttgtgacaaattctatataggtgc 193  Q
    ||||||||||||| |||| |||||||||| |||||||||||    
T  12407263 caaattactttcacttctggtgacaaattttatataggtgc 12407223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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