View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_34 (Length: 413)
Name: NF10140A_low_34
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_34 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 41357546 - 41357141
Alignment:
| Q |
16 |
atgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41357546 |
atgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatct |
41357447 |
T |
|
| Q |
116 |
aaagatctctatagcatagcatgatgcttcatatgtcattcat--------catacgatgttaaataagcacatagctagaatgtaaacaattgaacaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41357446 |
aaagatctctatagcatagcatgatgcttcatatgtcattcattcattcatcatatgatgttaaataagcacatagctagaatgtaaacaattgaacaac |
41357347 |
T |
|
| Q |
208 |
gcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41357346 |
gcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaa |
41357247 |
T |
|
| Q |
308 |
caagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgcta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41357246 |
caagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgcta |
41357147 |
T |
|
| Q |
408 |
taccgc |
413 |
Q |
| |
|
|||||| |
|
|
| T |
41357146 |
taccgc |
41357141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University