View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_342 (Length: 239)
Name: NF10140A_low_342
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_342 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 36017747 - 36017537
Alignment:
| Q |
22 |
atacataacatatacctttgatcaaaagggtgtcacttcatttctagaatagaagaatactattaggataat-----------gatcaaaagggtattac |
110 |
Q |
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| T |
36017747 |
atacataacatatacctttgatcaaaagggtgtcacttcatttctagaatagaagaacactattaggataataatcaaataatgatcaaaagggtattac |
36017648 |
T |
|
| Q |
111 |
ttcacccttagtaaagaaacaaccagaaggaccattatttgacaatagtgccaacattaaaggagtttcaacaccttcatcaatgcttaaatttccaata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36017647 |
ttcacccttagtaaagaaacaaccagaaggaccattatttgacaatagtgccaacattaaaggagtttcaacaccttcatcaatgcttaaatttccaata |
36017548 |
T |
|
| Q |
211 |
ttgttattcat |
221 |
Q |
| |
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||||||||||| |
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| T |
36017547 |
ttgttattcat |
36017537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 28889564 - 28889362
Alignment:
| Q |
22 |
atacataacatatacctttgatcaaaagggtgtcacttcatttctagaatagaagaatactattaggataat---gatcaaaagggtattacttcaccct |
118 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
28889564 |
atacataacataaacttttgatcaaaagggtgtcacttcatttctagaatataagaacactattaggataataatgatcaaaaggatattacttcaccct |
28889465 |
T |
|
| Q |
119 |
tagtaaagaaacaaccagaaggaccattatttgacaatagtgccaacattaaaggagtttcaacaccttcatcaatgcttaaatttccaatattgttatt |
218 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28889464 |
tattaaagaaacaaccagaaggaccattatttgaccatagtgccaacattaaaggagtttcaacaccttcatcaatgcttaagtttccaatattgttatt |
28889365 |
T |
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| Q |
219 |
cat |
221 |
Q |
| |
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||| |
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|
| T |
28889364 |
cat |
28889362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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