View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_347 (Length: 238)

Name: NF10140A_low_347
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_347
NF10140A_low_347
[»] chr1 (1 HSPs)
chr1 (1-232)||(36529325-36529556)
[»] chr4 (1 HSPs)
chr4 (85-159)||(2635056-2635130)
[»] chr6 (1 HSPs)
chr6 (88-159)||(5724751-5724822)
[»] chr5 (4 HSPs)
chr5 (91-160)||(15368135-15368204)
chr5 (85-129)||(35948149-35948193)
chr5 (85-126)||(11356054-11356095)
chr5 (85-126)||(11371299-11371340)
[»] chr8 (1 HSPs)
chr8 (88-145)||(39648266-39648323)
[»] chr2 (1 HSPs)
chr2 (88-148)||(43717246-43717306)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 36529556 - 36529325
Alignment:
Q  1 aaatcaatttcataatcaacgttattatttaaagtttaaaatataatcaattatgaagacaaattcaatcatatattgtataaaaatcaaacatgtcaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  36529556 aaatcaatttcataatcaacgttattatttaaagtttaaaatataatcaattctgaagacaaaatcaatcatatattgtataaaaatcaaacatgtcaaa 36529457  T
Q  101 attaattctacatttctaaaattaattttggcacctctaaaagtgaaatcaatcatacattaaatttataagtggtgttcatgtattaatttttactcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||||||||    
T  36529456 attaattctacatttctaaaattaattttggcacctctaaaagtgaaatcaaacatacattaaatttataagtggtattaacgtattaatttttactcca 36529357  T
Q  201 cttgcaaatttgttcatttcactaatgttcat 232  Q
    ||||||||||||||||||||||||||||||||    
T  36529356 cttgcaaatttgttcatttcactaatgttcat 36529325  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 2635130 - 2635056
Alignment:
Q  85 aatcaaacatgtcaaaattaattctacatttctaaaattaattttggcacctctaaaagtgaaatcaatcataca 159  Q
    |||||||||||||||||| |||| |||| ||||| ||| ||||||||  ||||||||||||||| ||| ||||||    
T  2635130 aatcaaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacataca 2635056  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 5724751 - 5724822
Alignment:
Q  88 caaacatgtcaaaattaattctacatttctaaaattaattttggcacctctaaaagtgaaatcaatcataca 159  Q
    ||||||||||| ||| ||||||||| ||||| ||||||||||||| |||||| ||||| || ||| ||||||    
T  5724751 caaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaacataca 5724822  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 15368204 - 15368135
Alignment:
Q  91 acatgtcaaaattaattctacatttctaaaattaattttggcacctctaaaagtgaaatcaatcatacat 160  Q
    |||||||||||| |||||||||| |||| ||| ||||||||| |||| ||||||| || ||| |||||||    
T  15368204 acatgtcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaacatacat 15368135  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 35948149 - 35948193
Alignment:
Q  85 aatcaaacatgtcaaaattaattctacatttctaaaattaatttt 129  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||||    
T  35948149 aatcaaacatgtcaaaattaattttacatttttaaaatgaatttt 35948193  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 11356095 - 11356054
Alignment:
Q  85 aatcaaacatgtcaaaattaattctacatttctaaaattaat 126  Q
    |||||||||||||||||||| | ||||| |||||||||||||    
T  11356095 aatcaaacatgtcaaaattagtcctacacttctaaaattaat 11356054  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 11371299 - 11371340
Alignment:
Q  85 aatcaaacatgtcaaaattaattctacatttctaaaattaat 126  Q
    |||||||||||||||||||| | ||||| |||||||||||||    
T  11371299 aatcaaacatgtcaaaattagtcctacacttctaaaattaat 11371340  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 39648266 - 39648323
Alignment:
Q  88 caaacatgtcaaaattaattctacatttctaaaattaattttggcacctctaaaagtg 145  Q
    ||||||||||||||| |||| ||||| |||| ||| ||||||| | ||||||||||||    
T  39648266 caaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtg 39648323  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 43717306 - 43717246
Alignment:
Q  88 caaacatgtcaaaattaattctacatttctaaaattaattttggcacctctaaaagtgaaa 148  Q
    ||||||||||||||| |||||||||  |||| ||| ||||||  |||||| ||||||||||    
T  43717306 caaacatgtcaaaatcaattctacacatctagaatcaattttaacacctccaaaagtgaaa 43717246  T

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