View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_349 (Length: 237)

Name: NF10140A_low_349
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_349
NF10140A_low_349
[»] chr5 (7 HSPs)
chr5 (1-237)||(37705003-37705239)
chr5 (114-191)||(1629760-1629837)
chr5 (107-208)||(1629683-1629784)
chr5 (92-208)||(29532047-29532161)
chr5 (94-135)||(2143379-2143420)
chr5 (102-187)||(30384213-30384297)
chr5 (112-208)||(29531855-29531950)
[»] chr7 (17 HSPs)
chr7 (92-206)||(41331325-41331439)
chr7 (95-188)||(30551947-30552040)
chr7 (112-191)||(12422044-12422123)
chr7 (95-188)||(6589558-6589651)
chr7 (112-208)||(32804640-32804736)
chr7 (99-187)||(1532197-1532285)
chr7 (92-206)||(18128518-18128632)
chr7 (92-187)||(28003341-28003434)
chr7 (94-187)||(5755594-5755685)
chr7 (108-173)||(32918529-32918595)
chr7 (107-208)||(12422355-12422455)
chr7 (98-198)||(20389633-20389734)
chr7 (112-188)||(6586862-6586938)
chr7 (106-186)||(48447283-48447363)
chr7 (101-208)||(21921059-21921164)
chr7 (95-156)||(1532441-1532501)
chr7 (114-187)||(21921012-21921085)
[»] scaffold0591 (1 HSPs)
scaffold0591 (92-208)||(3888-4003)
[»] chr8 (12 HSPs)
chr8 (101-187)||(2277209-2277295)
chr8 (108-188)||(27532989-27533069)
chr8 (92-171)||(37064689-37064768)
chr8 (107-206)||(15907689-15907787)
chr8 (92-206)||(15907944-15908058)
chr8 (124-206)||(12807666-12807748)
chr8 (118-210)||(41123-41216)
chr8 (114-159)||(32566724-32566769)
chr8 (107-191)||(32566887-32566969)
chr8 (101-189)||(2967707-2967794)
chr8 (108-184)||(3806856-3806932)
chr8 (92-187)||(3806998-3807091)
[»] chr4 (13 HSPs)
chr4 (92-206)||(22519807-22519921)
chr4 (98-187)||(48194394-48194483)
chr4 (114-206)||(33617920-33618010)
chr4 (112-187)||(53769786-53769861)
chr4 (119-193)||(42676809-42676883)
chr4 (106-182)||(22519373-22519449)
chr4 (99-187)||(22889586-22889674)
chr4 (99-187)||(22941250-22941338)
chr4 (102-208)||(2323266-2323372)
chr4 (108-185)||(34013786-34013861)
chr4 (106-187)||(31095106-31095187)
chr4 (119-191)||(22519774-22519846)
chr4 (112-188)||(34717586-34717660)
[»] chr2 (13 HSPs)
chr2 (92-206)||(8198646-8198759)
chr2 (92-206)||(8203406-8203519)
chr2 (123-206)||(45385838-45385921)
chr2 (9-187)||(4558828-4559007)
chr2 (112-206)||(4923428-4923522)
chr2 (92-187)||(42053964-42054059)
chr2 (138-204)||(4558680-4558745)
chr2 (129-187)||(8198419-8198477)
chr2 (114-156)||(8198608-8198650)
chr2 (129-187)||(8203179-8203237)
chr2 (114-156)||(8203368-8203410)
chr2 (98-187)||(3289442-3289531)
chr2 (133-208)||(32546464-32546538)
[»] chr1 (15 HSPs)
chr1 (95-188)||(16554303-16554396)
chr1 (98-187)||(18470189-18470279)
chr1 (92-187)||(802251-802346)
chr1 (99-206)||(12656368-12656474)
chr1 (114-187)||(16026108-16026181)
chr1 (106-206)||(363805-363906)
chr1 (92-187)||(46530163-46530258)
chr1 (115-186)||(47726623-47726693)
chr1 (115-186)||(47747929-47747999)
chr1 (98-187)||(363615-363705)
chr1 (99-156)||(48130213-48130268)
chr1 (115-193)||(48130439-48130516)
chr1 (107-206)||(46530414-46530517)
chr1 (101-208)||(11016967-11017075)
chr1 (92-171)||(26706353-26706432)
[»] chr6 (9 HSPs)
chr6 (95-206)||(12458392-12458504)
chr6 (92-187)||(33547750-33547846)
chr6 (92-193)||(16419591-16419695)
chr6 (107-156)||(7202300-7202349)
chr6 (108-188)||(10544298-10544376)
chr6 (107-189)||(31314513-31314594)
chr6 (114-187)||(196063-196135)
chr6 (114-187)||(16419660-16419732)
chr6 (106-187)||(33547811-33547891)
[»] chr3 (7 HSPs)
chr3 (98-187)||(51265894-51265984)
chr3 (92-188)||(44291413-44291509)
chr3 (116-206)||(48200381-48200471)
chr3 (112-206)||(33291582-33291676)
chr3 (100-156)||(44291025-44291081)
chr3 (95-156)||(51265679-51265739)
chr3 (114-206)||(14747077-14747167)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 37705003 - 37705239
Alignment:
Q  1 taggtcacgaataacgtgcagttttaagatctgaaatccctcaattgcttatagttaaagagcttagaggtactaattggtacgnnnnnnnttaaaggac 100  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||  ||| ||||||| ||||||||||  ||||||||||||       |||||||||    
T  37705003 taggtcccgaataacttgcagttttaagatctgaaatccctcaatttgttacagttaaatagcttagaggacctaattggtacgaaaaaaattaaaggac 37705102  T
Q  101 caactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgt 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37705103 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaatcttaaatgaccaatttcttacaactaaataacttaaaagacttatggtgt 37705202  T
Q  201 aatttaacatttattttatgtacgtgttttttctatg 237  Q
    |||||||||||||||||||||||||||||||| ||||    
T  37705203 aatttaacatttattttatgtacgtgttttttgtatg 37705239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 1629837 - 1629760
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    |||| ||||||||||||| ||| || |||| |||||||||||| |||| |||| |||||| ||| |||||||||||||    
T  1629837 ttaaataacttaaaggacttaattgctacggaaaaaacttaaaggatcgatttgttacaattaattaacttaaaagac 1629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 1629784 - 1629683
Alignment:
Q  107 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    |||| |||||||||||||||| ||||||| | ||||  ||||   |||||  |  ||||| |||||| ||||||||||||| ||||| ||||||||||||    
T  1629784 gttacaattaattaacttaaaagacctaatttgtacagaaaatttttaaagaacgaatttattacaattaaataacttaaaggacttttggtgtaattta 1629685  T
Q  207 ac 208  Q
    ||    
T  1629684 ac 1629683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 29532047 - 29532161
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    ||||| ||||||||  ||| | ||||||||| ||||| | ||||||| |||| |||||| ||||| | ||||||| |||||| | |||||||| ||||||    
T  29532047 ttaaatgaccaactttttacagttaattaacataaagaagctaagtgatacg-aaaaaatttaaaggttcaatttgttacaattgaataactt-aaagac 29532144  T
Q  192 ttatggtgtaatttaac 208  Q
     |||| |||||||||||    
T  29532145 atatgatgtaatttaac 29532161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 2143379 - 2143420
Alignment:
Q  94 aaaggaccaactagttataattaattaacttaaaggacctaa 135  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  2143379 aaaggactaacttgttacaattaattaacttaaaggacctaa 2143420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 30384297 - 30384213
Alignment:
Q  102 aactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||| |||| |||||| ||||||||| ||| |||||  |||| |||||||||||| ||  ||||| |||||| |||||||||||||    
T  30384297 aacttgttacaattaaataacttaaaagacgtaagtaatacg-aaaaaacttaaaagacaaatttgttacaattaaataacttaaa 30384213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 29531950 - 29531855
Alignment:
Q  112 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 208  Q
    |||||| ||||||||| ||| ||| || |||| |||||||||||| ||  ||||| |||||| ||||||||||||| ||| | |  |||||||||||    
T  29531950 aattaaataacttaaatgacgtaaatgatacg-aaaaaacttaaaggactaatttattacaattaaataacttaaatgacatctcatgtaatttaac 29531855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 41331325 - 41331439
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    |||||| ||||||| ||||||||| ||||||||||| || ||| ||||||||  ||||||||||||||||||||| |||||| ||||||||||||| |||    
T  41331325 ttaaagaaccaacttgttataatttattaacttaaatgagctaggtggtacgagaaaaacttaaatgatcaatttattacaattaaataacttaaatgac 41331424  T
Q  192 ttatggtgtaattta 206  Q
    ||||| | |||||||    
T  41331425 ttatgatataattta 41331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 30551947 - 30552040
Alignment:
Q  95 aaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 188  Q
    ||||||||||| |||| |||| ||||||||||| ||||||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  30551947 aaggaccaacttgttacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 30552040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 12422123 - 12422044
Alignment:
Q  112 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||| | |||||||||||||||    
T  12422123 aattaatttacttaaaggacctaagtggtatgaaaaaaacttaaatgaccaatttattacaatttaataacttaaaagac 12422044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 6589558 - 6589651
Alignment:
Q  95 aaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 188  Q
    |||||||||||  ||| |||| ||||||||||| ||||||||||||||  |||||||||||| ||||||||| |||||| ||||| ||||||||    
T  6589558 aaggaccaacttattacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggatcaatttattacaattaaattacttaaaa 6589651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 32804640 - 32804736
Alignment:
Q  112 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 208  Q
    |||||||||||||||| ||| ||||| ||| | ||||||| |||| ||||||||| |||||| |||||| | |||||||||| ||||||||||||||    
T  32804640 aattaattaacttaaatgacttaagttgtatgaaaaaaacctaaaagatcaatttattacaattaaatatcctaaaagacttgtggtgtaatttaac 32804736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 1532285 - 1532197
Alignment:
Q  99 accaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||||| |||||| |||| |||||||||||||||||| |||||  ||||||  ||||||||||| || |||||| |||||||||||||    
T  1532285 accaacttgttatagttaaataacttaaaggacctaagaggtacaaaaaaaatgtaaatgatcaacttattacaattaaataacttaaa 1532197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 18128518 - 18128632
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaactt-aaatgatcaatttcttacaactaaataacttaaaaga 190  Q
    |||||| |||||||  ||| ||||||||||||||||| |||||||| ||||| ||||||||| ||| || |||||| |||||  ||||||| ||||| ||    
T  18128518 ttaaagcaccaacttattacaattaattaacttaaagaacctaagtagtacg-aaaaaacttaaaaggaccaatttattacatttaaataatttaaagga 18128616  T
Q  191 cttatggtgtaattta 206  Q
    | ||||||||||||||    
T  18128617 cctatggtgtaattta 18128632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 28003341 - 28003434
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||||| ||||| |||| | |||||||||||||||||||||| ||||||| ||||||||| || |||||| || |||||| ||||||| |||||    
T  28003341 ttaaaggatcaacttgttacatttaattaacttaaaggacctaattggtacg-aaaaaactt-aacgatcaacttgttacaattaaataatttaaa 28003434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 5755685 - 5755594
Alignment:
Q  94 aaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||||||||| |||| ||||||||||| |||| ||  |||||||||||  ||||| ||||| |  |||||| |||||| |||||||||||||    
T  5755685 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg--aaaaaattaaagggccaatttgttacaattaaataacttaaa 5755594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 32918595 - 32918529
Alignment:
Q  108 ttataattaattaacttaaaggacctaagtggtacgtaa-aaaacttaaatgatcaatttcttacaa 173  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||| ||| ||||||||| ||||||    
T  32918595 ttataattaattaacttaaaggagctaagtgatacgaaataaaactcaaaagatcaatttattacaa 32918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 12422355 - 12422455
Alignment:
Q  107 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    |||| |||||| ||||||||| ||| |||||| |||  |||||||||||| ||| ||||| |||||| |||||||||||||  | ||  |||||||||||    
T  12422355 gttaaaattaaataacttaaaagacgtaagtgataca-aaaaaacttaaaggatgaatttgttacaattaaataacttaaagaaattccggtgtaattta 12422453  T
Q  207 ac 208  Q
    ||    
T  12422454 ac 12422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 20389734 - 20389633
Alignment:
Q  98 gaccaactagttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatg 196  Q
    |||||||| |||| ||||||||||||||||| | |||||| |||||  ||||||||||||  |  | ||| |||||  ||||||||||||||||| ||||    
T  20389734 gaccaacttgttacaattaattaacttaaagcatctaagtagtacgaaaaaaaacttaaagaactactttgttacatttaaataacttaaaagacctatg 20389635  T
Q  197 gt 198  Q
    ||    
T  20389634 gt 20389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 6586938 - 6586862
Alignment:
Q  112 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 188  Q
    |||| ||||||||||| ||||||||| ||||  |||||| ||||  ||||||||| |||||| ||||| ||||||||    
T  6586938 aattgattaacttaaatgacctaagtagtaccaaaaaaatttaagagatcaatttattacaattaaattacttaaaa 6586862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 48447363 - 48447283
Alignment:
Q  106 agttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 186  Q
    ||||| |||||| |||||||||||||||||| | |||| |||| |||||||  |  ||||| |||||| ||||||||||||    
T  48447363 agttacaattaaataacttaaaggacctaagcgttacgaaaaatacttaaagtactaatttgttacaattaaataacttaa 48447283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 21921059 - 21921164
Alignment:
Q  101 caactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgt 200  Q
    ||||| |||| | ||||||||||||||| || |||||||||   |||||||||||||||  ||||  ||| |  ||||||||||||| |||||||| |||    
T  21921059 caacttgttacagttaattaacttaaag-acataagtggtaaa-aaaaaacttaaatgacaaattagttatagttaaataacttaaatgacttatgatgt 21921156  T
Q  201 aatttaac 208  Q
    ||||||||    
T  21921157 aatttaac 21921164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 1532441 - 1532501
Alignment:
Q  95 aaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 156  Q
    ||||||||||| |||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  1532441 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 1532501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 21921012 - 21921085
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||| ||||||||||||||||| | ||||| ||||||||||||| | ||| || |||||  ||| |||||||||    
T  21921012 ttaaataacttaaaggacctaattagtacggaaaaaacttaaataaacaacttgttacagttaattaacttaaa 21921085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 3888 - 4003
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    |||||||||||||| |||| ||| ||||||||||||| |||| ||||||| | ||| |||||||||||||||||| |||||| |||||||| |||| |||    
T  3888 ttaaaggaccaacttgttacaatcaattaacttaaag-acctcagtggtaggaaaataacttaaatgatcaatttattacaattaaataacataaatgac 3986  T
Q  192 ttatggtgtaatttaac 208  Q
    || ||||||||||||||    
T  3987 ttctggtgtaatttaac 4003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 2277209 - 2277295
Alignment:
Q  101 caactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||| |||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||| |||||||||||||    
T  2277209 caacttgttacaattaattaacttaaaggacctaagtggtacaaaaaaaacttaaaggatcaatttgttacaattaaataacttaaa 2277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 27533069 - 27532989
Alignment:
Q  108 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 188  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  27533069 ttataattaaataacttaaaggacgtaagtggtacataaaaaacttaaaagatcaatttattacaattaaataacttaaaa 27532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 37064689 - 37064768
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 171  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||||| |||| ||||| ||||    
T  37064689 ttaaaggaccaacttgttataattaattaacttaaaggacttaagtggtgcgaaaaaaacttaattgattaatttattac 37064768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 15907787 - 15907689
Alignment:
Q  107 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    |||||||||||||||||||||| |  ||||||||||| |||||||||||| || |||||| | |||| ||||||||||||| || || ||||||||||||    
T  15907787 gttataattaattaacttaaagaatataagtggtacgaaaaaaacttaaa-gaccaatttatcacaagtaaataacttaaaggatttctggtgtaattta 15907689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 15907944 - 15908058
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    |||||||| ||||| |||||||||||||||| ||||  |||||||||||| | ||||||||||||| |  ||||| |||||  |||||| |||||| ||     
T  15907944 ttaaaggatcaacttgttataattaattaacctaaaaaacctaagtggtatgaaaaaaacttaaataactaatttattacagttaaatatcttaaaggat 15908043  T
Q  192 ttatggtgtaattta 206  Q
    || ||||||||||||    
T  15908044 ttttggtgtaattta 15908058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 12807666 - 12807748
Alignment:
Q  124 taaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    |||||||||||||||||| |||||||| |||||  |||||||| | |||| ||||||||||||||||  | ||||||||||||    
T  12807666 taaaggacctaagtggtatgtaaaaaatttaaaaaatcaatttataacaattaaataacttaaaagatctctggtgtaattta 12807748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 41123 - 41216
Alignment:
Q  118 ttaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga-cttatggtgtaatttaacat 210  Q
    ||||||||||  || ||||||||||  |||||||||||| ||  ||||| |||||| ||||||| ||||| || ||  ||||||||||||||||    
T  41123 ttaacttaaataacataagtggtacacaaaaaacttaaaggactaatttgttacaattaaataatttaaaggatctcttggtgtaatttaacat 41216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 32566769 - 32566724
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatga 159  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  32566769 ttaaataacttaaaggacttaagtggcacgaaaaaaacttaaatga 32566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 32566887 - 32566969
Alignment:
Q  107 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    |||| ||||||| |||||||| ||||||| | |||| |||||  | |||| ||||||||||||| ||  ||||||||||||||||    
T  32566887 gttacaattaataaacttaaatgacctaaatagtacataaaa--cctaaaggatcaatttcttataataaaataacttaaaagac 32566969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 2967707 - 2967794
Alignment:
Q  101 caactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 189  Q
    ||||| ||||||||||||||| |||||||| |||||| | | | ||||||||||||  | |||||| |||  | |||||||||||||||    
T  2967707 caacttgttataattaattaatttaaaggatctaagtagaaggaaaaaaacttaaa-aaacaatttgttaggattaaataacttaaaag 2967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 3806932 - 3806856
Alignment:
Q  108 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactt 184  Q
    |||||||||| ||| | |||||||||||||| |||| |||| ||||||||||  || || |||||  ||||||||||    
T  3806932 ttataattaaataattaaaaggacctaagtgctacgaaaaatacttaaatgactaacttgttacagttaaataactt 3806856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 3806998 - 3807091
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||| || |||| |||| |||||||||||||||| ||| ||||| |||  ||||||||||| | || |||||| |||| | ||||||| |||||    
T  3806998 ttaaagtactaacttgttaaaattaattaacttaaaagacataagttgta--taaaaaacttagaggaccaatttgttactattaaataatttaaa 3807091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 22519807 - 22519921
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga 190  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||||||||| | ||||||||| || || |||||| |||||| ||||||| || |||||    
T  22519807 ttaaaggatcaacttgttataattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaatttgttacaattaaataa-tttaaaga 22519905  T
Q  191 cttatggtgtaattta 206  Q
    | | ||||||||||||    
T  22519906 cctctggtgtaattta 22519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 48194394 - 48194483
Alignment:
Q  98 gaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||||| |||| | |||| |||||||||||||||||| |||||| ||||||| ||||||||||| || |||||| |||||||||||||    
T  48194394 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 48194483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 33617920 - 33618010
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    ||||||||||||||||||||||| ||||||  ||||||||||| || |||||| |||||| ||||||||||||| ||| | | ||||||||||    
T  33617920 ttaattaacttaaaggacctaagcggtacg--aaaaacttaaaggaccaatttattacaattaaataacttaaatgacctcttgtgtaattta 33618010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 53769786 - 53769861
Alignment:
Q  112 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||| ||| ||||| ||||||||||||| | |||| ||||||||||| ||||| |||||| ||||||| |||||    
T  53769786 aattaaataatttaaaagacctaagtggtatgaaaaatacttaaatgattaatttattacaattaaataatttaaa 53769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 42676809 - 42676883
Alignment:
Q  119 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 193  Q
    ||||||||| |||||||||| |||| ||||||| |||| ||| || || |||||| ||| |||||||||||||||    
T  42676809 taacttaaatgacctaagtgatacgaaaaaaacataaaggattaacttgttacaattaattaacttaaaagactt 42676883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 22519449 - 22519373
Alignment:
Q  106 agttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataac 182  Q
    ||||| |||||| |||||||||||||||||||| |||| |||| ||||||| ||  || || |||||| ||||||||    
T  22519449 agttacaattaaataacttaaaggacctaagtgttacgaaaaatacttaaaggactaacttgttacaattaaataac 22519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 22889674 - 22889586
Alignment:
Q  99 accaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||||| |||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22889674 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22889586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 22941338 - 22941250
Alignment:
Q  99 accaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||||| |||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22941338 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 2323372 - 2323266
Alignment:
Q  102 aactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 201  Q
    |||| |||| ||||||||||||| || || |||  ||||||  |||||||||||| |   ||||| |||||| ||||||| ||||| ||||| || ||||    
T  2323372 aacttgttacaattaattaacttgaaagaactacatggtaccaaaaaaacttaaagggctaatttgttacaattaaataatttaaaggacttttgatgta 2323273  T
Q  202 atttaac 208  Q
    |||||||    
T  2323272 atttaac 2323266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 34013786 - 34013861
Alignment:
Q  108 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactta 185  Q
    ||||| |||||||| ||||||||| ||||| ||| | |||||  ||||||||| ||||| |||||| |||||||||||    
T  34013786 ttatatttaattaatttaaaggacttaagtagtatgaaaaaa--ttaaatgattaatttgttacaattaaataactta 34013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 31095187 - 31095106
Alignment:
Q  106 agttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||| |||||| |||||||||| ||||||||| |||  | || ||||||||||| || || ||| || |||||||||||||    
T  31095187 agttacaattaaataacttaaagaacctaagtgttacaaacaatacttaaatgattaacttgttataattaaataacttaaa 31095106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 22519774 - 22519846
Alignment:
Q  119 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    ||||||||| ||||||| || |||  |||||||||||| |||||| || ||| || ||| |||||||||||||    
T  22519774 taacttaaatgacctaattgatacagaaaaaacttaaaggatcaacttgttataattaattaacttaaaagac 22519846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 34717586 - 34717660
Alignment:
Q  112 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 188  Q
    |||||||||||||||| ||| || ||| |||| ||||||||||||| |  ||||| |||||| ||||||||||||||    
T  34717586 aattaattaacttaaaagacttaggtgatacg-aaaaaacttaaat-acaaatttattacaattaaataacttaaaa 34717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 8198646 - 8198759
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    ||||||| ||||||  ||| ||||||||| |||||||||||||||||||||| |||||||||||| || |||||| |||||| ||| ||||||||| ||     
T  8198646 ttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaacttaaa-gaccaatttgttacaattaactaacttaaaggat 8198744  T
Q  192 ttatggtgtaattta 206  Q
    || |||| |||||||    
T  8198745 ttctggtataattta 8198759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 8203406 - 8203519
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 191  Q
    ||||||| ||||||  ||| ||||||||| |||||||||||||||||||||| |||||||||||| || |||||| |||||| ||| ||||||||| ||     
T  8203406 ttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaacttaaa-gaccaatttgttacaattaactaacttaaaggat 8203504  T
Q  192 ttatggtgtaattta 206  Q
    || |||| |||||||    
T  8203505 ttctggtataattta 8203519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 45385921 - 45385838
Alignment:
Q  123 ttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    ||||||||| ||||||||||| |||||||||||| |  |||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  45385921 ttaaaggacgtaagtggtacgaaaaaaacttaaagggccaatttgttacaattaaataacttaaaggacctatggtgtaattta 45385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 4558828 - 4559007
Alignment:
Q  9 gaataacgtgcagttttaagatctgaaatccctcaattgcttatagttaaagagcttagaggtactaattggtac-gnnnnnnnttaaaggaccaactag 107  Q
    ||||||| |||| ||||||||||| |||| |||||| |  |||  |||||| |||||| |||  ||||||||||| |       |||||||| ||||| |    
T  4558828 gaataacttgcatttttaagatctaaaatacctcaaatagttacggttaaatagcttaaaggacctaattggtacagacaaaacttaaaggaacaacttg 4558927  T
Q  108 ttataattaattaacttaaaggacctaagtggta-cgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||| ||||||||||| ||||| |||||||| ||| |  |||||||||||| ||||||||| |||||| |||||||||||||    
T  4558928 ttacaattaattaacataaagtacctaagttgtaccaaaaaaaacttaaa-gatcaatttattacaattaaataacttaaa 4559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 4923522 - 4923428
Alignment:
Q  112 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    |||| |||||| ||||  |||||| ||||||| ||||||| |||||||||||||| ||| || |||| ||||||| |||| |  |||||||||||    
T  4923522 aatttattaacgtaaaaaacctaaatggtacggaaaaaacataaatgatcaatttattataattaaaaaacttaagagacatccggtgtaattta 4923428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 42054059 - 42053964
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||||||| |||| |||| ||||||  ||||||||| ||||||||| ||   | |||||||||| ||| || || ||| ||||||||||||||||    
T  42054059 ttaaaggactaacttgttaaaattaaacaacttaaagaacctaagtgatataaacaaaacttaaaggattaacttattataactaaataacttaaa 42053964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 4558745 - 4558680
Alignment:
Q  138 ggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 204  Q
    |||||| |||||||||||| || |||||| |||||| |||||||||||| ||| |||| ||||||||    
T  4558745 ggtacgaaaaaaacttaaa-gaccaatttattacaattaaataacttaagagaattatcgtgtaatt 4558680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 8198477 - 8198419
Alignment:
Q  129 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8198477 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8198419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 8198608 - 8198650
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 156  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||    
T  8198608 ttaaataacttaaaggacctaattggtacggaaaaaacttaaa 8198650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 8203237 - 8203179
Alignment:
Q  129 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8203237 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8203179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 8203368 - 8203410
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 156  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||    
T  8203368 ttaaataacttaaaggacctaattggtacggaaaaaacttaaa 8203410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 3289442 - 3289531
Alignment:
Q  98 gaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||||| |||| |||||||| | ||||| ||  |||||| |||  |||||||||||| || |||||| |||||| ||||||| |||||    
T  3289442 gaccaacttgttacaattaattcaattaaaagatttaagtgatacaaaaaaaacttaaaagaccaatttattacaattaaataatttaaa 3289531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 32546464 - 32546538
Alignment:
Q  133 taagtggtacgtaaaa-aacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 208  Q
    ||||||||||| |||| |||||||||||||||||| |||| | |||| ||||||||  || | ||||||||||||||    
T  32546464 taagtggtacgaaaaataacttaaatgatcaatttattacgattaaaaaacttaaa--acctctggtgtaatttaac 32546538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 16554396 - 16554303
Alignment:
Q  95 aaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 188  Q
    ||||||||||| |||| |||| ||||||||||| ||| ||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  16554396 aaggaccaacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 16554303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 18470279 - 18470189
Alignment:
Q  98 gaccaactagttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||||| |||| | |||| |||||||||||||||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  18470279 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 18470189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 802251 - 802346
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||||||||||| |||| |||||||||| | ||||||  ||||||||||| |||||  ||||| || |||||| |||||  |||||||||||||    
T  802251 ttaaaggaccaacttgttacaattaattaattcaaaggatataagtggtacgaaaaaagtttaaaggaccaatttattacatttaaataacttaaa 802346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 12656368 - 12656474
Alignment:
Q  99 accaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 198  Q
    |||||||  ||| ||||||||||||||||||   ||||||||||| |||||| |||||  |||||| | |||||| ||||||||||||| |||||  |||    
T  12656368 accaacttattacaattaattaacttaaagggtttaagtggtacg-aaaaaatttaaaaaatcaatatgttacaattaaataacttaaaggactttcggt 12656466  T
Q  199 gtaattta 206  Q
    ||||||||    
T  12656467 gtaattta 12656474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 16026181 - 16026108
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||| |||||||||||||||||| |||||| ||||||  |||||||| || || |||||| |||||||||||||    
T  16026181 ttaaataacttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaaa 16026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 363805 - 363906
Alignment:
Q  106 agttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag-acttatggtgtaatt 204  Q
    ||||| ||||||  |||||||| ||| ||||   |||| |||| ||||||||||  |||||||||||| ||||||||||||||| || | ||||||||||    
T  363805 agttacaattaaacaacttaaatgacttaagcattacgaaaaatacttaaatgacaaatttcttacaattaaataacttaaaagaacatctggtgtaatt 363904  T
Q  205 ta 206  Q
    ||    
T  363905 ta 363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 46530258 - 46530163
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||||| | |||| |||| |||||||||||||||| |||||||||||| || |||| | |||||  | || ||| | |||| |||||||||||||    
T  46530258 ttaaagggcaaacttgttacaattaattaacttaaaagacctaagtggtgcgaaaaagaattaaagaaccagtttgtgacaattaaataacttaaa 46530163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 47726623 - 47726693
Alignment:
Q  115 taattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 186  Q
    ||||||||||||| |||||||||| || | ||||||||||||| | |||||| ||||||  |||||||||||    
T  47726623 taattaacttaaatgacctaagtgatatgaaaaaaacttaaat-accaatttattacaataaaataacttaa 47726693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 47747929 - 47747999
Alignment:
Q  115 taattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 186  Q
    ||||||||||||| |||||||||| || | ||||||||||||| | |||||| ||||||  |||||||||||    
T  47747929 taattaacttaaatgacctaagtgatatgaaaaaaacttaaat-accaatttattacaataaaataacttaa 47747999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 363705 - 363615
Alignment:
Q  98 gaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaa-acttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||||| |||| ||||||||||| ||||| ||||||||| |||  ||||| |||||||  | | |||| |||||| |||||||||||||    
T  363705 gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaaagacttaaagaacctatttattacaattaaataacttaaa 363615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 48130268 - 48130213
Alignment:
Q  99 accaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 156  Q
    ||||||| |||| |||||||||||||||| || |||||||||||  ||||||||||||    
T  48130268 accaacttgttacaattaattaacttaaatgatctaagtggtac--aaaaaacttaaa 48130213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 48130439 - 48130516
Alignment:
Q  115 taattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 193  Q
    ||||||||||||| ||||||| |||||   | ||||||||||| |||||||| |||||| ||||||| ||||| |||||    
T  48130439 taattaacttaaaagacctaaatggtaaa-agaaaacttaaataatcaatttattacaattaaataatttaaaggactt 48130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 46530414 - 46530517
Alignment:
Q  107 gttataattaattaacttaaaggacctaagtggtacgtaaaaaa---cttaaat-gatcaatttcttacaactaaataacttaaaagacttatggtgtaa 202  Q
    |||| |||||||||||||||| ||| | ||||||||| ||||||   ||||||  || |||||| |||||| ||||||||| ||| ||| | ||||||||    
T  46530414 gttacaattaattaacttaaatgacgtgagtggtacgaaaaaaaaaacttaaaaagagcaatttgttacaaataaataactaaaatgacatctggtgtaa 46530513  T
Q  203 ttta 206  Q
    ||||    
T  46530514 ttta 46530517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 11016967 - 11017075
Alignment:
Q  101 caactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaa-atgatcaatttcttacaactaaataacttaaaagacttatggtg 199  Q
    ||||| |||| |||||| |||||||||  ||||||||| || | ||||||  ||| | ||| ||||| ||| || ||||||||||||| ||| ||| |||    
T  11016967 caacttgttacaattaaataacttaaaacacctaagtgatatgcaaaaaaaataagaagattaatttattataattaaataacttaaaggacatatagtg 11017066  T
Q  200 taatttaac 208  Q
    |||||||||    
T  11017067 taatttaac 11017075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 26706353 - 26706432
Alignment:
Q  92 ttaaaggaccaactagttataattaattaactt-aaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 171  Q
    ||||||||| |||| || ||||||||||||||| ||||||| ||| || |||| ||||||||||||  |||||||| ||||    
T  26706353 ttaaaggacaaacttgtaataattaattaacttaaaaggacttaaatgatacg-aaaaaacttaaagaatcaatttattac 26706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 12458392 - 12458504
Alignment:
Q  95 aaggaccaactagttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 193  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||  |||| | ||||||||||||  | ||| || |||||| ||||||||||||| |||||    
T  12458392 aaggaccaacttgttttaatttattaacttaaaggacctaagaagtacgggaaaaaacttaaagtaccaaattgttacaattaaataacttaaaggactt 12458491  T
Q  194 atggtgtaattta 206  Q
     | ||||||||||    
T  12458492 ctagtgtaattta 12458504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 33547846 - 33547750
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaa-aaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||| ||| |||| |||| |||||||||||||||||||| ||||||| ||  ||| ||||||||| || |||||| |||||| |||||||||||||    
T  33547846 ttaaaagacaaacttgttacaattaattaacttaaaggacataagtggaacaaaaataaacttaaaggaccaatttgttacaattaaataacttaaa 33547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 16419695 - 16419591
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtac---gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 188  Q
    ||||| |||||||| |||| |||||||||||||||| || |||| ||||||     |||| |||| |||||||||||| |||||| |||||||||||||     
T  16419695 ttaaatgaccaacttgttacaattaattaacttaaatgatctaattggtacaaaagaaaatacttcaatgatcaatttgttacaattaaataacttaaag 16419596  T
Q  189 gactt 193  Q
    |||||    
T  16419595 gactt 16419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 7202349 - 7202300
Alignment:
Q  107 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 156  Q
    |||| ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  7202349 gttacaattaattaacataaaggacctaaatggtacgaaaaaaacttaaa 7202300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 10544298 - 10544376
Alignment:
Q  108 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 188  Q
    ||||||||||||||||||| ||| |||| | ||||| ||||||||||||   ||||||| |||||  ||||||||||||||    
T  10544298 ttataattaattaacttaatggatctaactagtacgaaaaaaacttaaa--gtcaatttgttacagataaataacttaaaa 10544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 31314594 - 31314513
Alignment:
Q  107 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 189  Q
    ||||||||||| |||||||||  || |||||| |||  ||||||||||||||||||| || ||| || ||||||||| |||||    
T  31314594 gttataattaaataacttaaaa-acataagtgatactgaaaaaacttaaatgatcaacttgttataattaaataactcaaaag 31314513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 196135 - 196063
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||| ||||||||||||||||| || |||  ||||||||||||| |||||||| |||||| ||| ||| |||||    
T  196135 ttaagtaacttaaaggacctaattgatactgaaaaaacttaaat-atcaatttgttacaattaattaatttaaa 196063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 16419732 - 16419660
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||| |||||||||||| | || ||||||| ||||||||||||||| ||| || |||||| ||| |||||||||    
T  16419732 ttaaataacttaaaggatcaaattggtacg-aaaaaacttaaatgaccaacttgttacaattaattaacttaaa 16419660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 33547891 - 33547811
Alignment:
Q  106 agttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    ||||| |||||| ||||||||||||||||| ||||| | |||||||||||| ||  || || |||||| ||| |||||||||    
T  33547891 agttacaattaaataacttaaaggacctaaatggtatg-aaaaaacttaaaagacaaacttgttacaattaattaacttaaa 33547811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 51265894 - 51265984
Alignment:
Q  98 gaccaactagttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 187  Q
    |||||||| |||||| |||| |||||||||||| ||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  51265894 gaccaacttgttatagttaaataacttaaaggatctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 51265984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 44291413 - 44291509
Alignment:
Q  92 ttaaaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 188  Q
    ||||||||| |||| |||| |||||| ||||||||||||| |||||| |||  |||||| ||| | || |||||| |||||| ||||||||||||||    
T  44291413 ttaaaggactaacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaaa 44291509  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 48200381 - 48200471
Alignment:
Q  116 aattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    |||||| ||||| ||| |||| |||||| |||||| ||||||||||||||  |||||| ||||||| |||||||| || | ||||||||||    
T  48200381 aattaatttaaaagacttaagcggtacgaaaaaaaattaaatgatcaattctttacaattaaataagttaaaagatttctagtgtaattta 48200471  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 33291582 - 33291676
Alignment:
Q  112 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    |||||||||||||||| ||| |||||||||   |||||  |||||  |  ||||| |||||| ||||||||||||| |||||||| |||||||||    
T  33291582 aattaattaacttaaatgacataagtggtataaaaaaagtttaaagtactaatttgttacaattaaataacttaaaggacttatgttgtaattta 33291676  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 44291081 - 44291025
Alignment:
Q  100 ccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 156  Q
    |||||| |||| || ||||||||||||| ||| ||||||||||| ||||||||||||    
T  44291081 ccaacttgttacaactaattaacttaaatgacttaagtggtacgaaaaaaacttaaa 44291025  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 51265739 - 51265679
Alignment:
Q  95 aaggaccaactagttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 156  Q
    ||||||||||| |||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  51265739 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 51265679  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 14747077 - 14747167
Alignment:
Q  114 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 206  Q
    |||| |||| |||| |||||||||||||   ||||||||||||  ||||| || |||||| ||||||| ||||||||||| | ||||||||||    
T  14747077 ttaaataacataaatgacctaagtggtaaa-aaaaaacttaaaa-atcaaattgttacaattaaataaattaaaagactttttgtgtaattta 14747167  T

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