View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_350 (Length: 237)
Name: NF10140A_low_350
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_350 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 25196015 - 25196202
Alignment:
| Q |
18 |
atcaatactagaatcaattctacttgagagcaaccaaacctatcaaaataaattttggctcctgaatgtgaaactgaacatcaatgatataactaacttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25196015 |
atcaatactagaatcaattctacttgagagcaaccaaacctatcaaaataaattttggctcctgaatgtgaaactgaacataaatgatataactaacttc |
25196114 |
T |
|
| Q |
118 |
ataagaacttatcaagataaatctcaccgttgctgatggtagacggaggccaactccggcggctttcccgacgaggttttatttttacggctagttcagt |
217 |
Q |
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| T |
25196115 |
ataagaac------------atctcaccgttgctgatggtagacggaggccaactccggcggctttcccgacgaggttttatttttacggccagttcagt |
25196202 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 33141805 - 33141849
Alignment:
| Q |
29 |
aatcaattctacttgagagcaaccaaacctatcaaaataaatttt |
73 |
Q |
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|||||||| ||||||||||||||||||| ||||||||| |||||| |
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| T |
33141805 |
aatcaattatacttgagagcaaccaaacatatcaaaatcaatttt |
33141849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 18690662 - 18690622
Alignment:
| Q |
26 |
tagaatcaattctacttgagagcaaccaaacctatcaaaat |
66 |
Q |
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| T |
18690662 |
tagaatcaattctacttgaaagcaaccaaacatgtcaaaat |
18690622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 38592220 - 38592173
Alignment:
| Q |
26 |
tagaatcaattctacttgagagcaaccaaacctatcaaaataaatttt |
73 |
Q |
| |
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| T |
38592220 |
tagaatcaattctacttgagagcaaccaaacatatcaatatcaatttt |
38592173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 32088671 - 32088715
Alignment:
| Q |
29 |
aatcaattctacttgagagcaaccaaacctatcaaaataaatttt |
73 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||| |||||| |
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|
| T |
32088671 |
aatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt |
32088715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 29728989 - 29728938
Alignment:
| Q |
29 |
aatcaattctacttgagagcaaccaaacctatcaaaataaattttggctcct |
80 |
Q |
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|
||||||||||||| |||||||||||||| | ||||||| |||||||| |||| |
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|
| T |
29728989 |
aatcaattctactcgagagcaaccaaacttgtcaaaatcaattttggatcct |
29728938 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 12306721 - 12306679
Alignment:
| Q |
29 |
aatcaattctacttgagagcaaccaaacctatcaaaataaatt |
71 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| |||| |
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|
| T |
12306721 |
aatcaattctacttgagagcaaccaaacatgtcaaaatcaatt |
12306679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 1101990 - 1101941
Alignment:
| Q |
29 |
aatcaattctacttgagagcaaccaaacctatcaaaataaattttggctc |
78 |
Q |
| |
|
||||||||||||| ||| ||||||||| | ||||||||||||||||||| |
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| T |
1101990 |
aatcaattctactcgagtgcaaccaaaaatttcaaaataaattttggctc |
1101941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 2410028 - 2410072
Alignment:
| Q |
29 |
aatcaattctacttgagagcaaccaaacctatcaaaataaatttt |
73 |
Q |
| |
|
|||||||||||||||||| || |||||| | |||||||||||||| |
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| T |
2410028 |
aatcaattctacttgagaacatccaaacatgtcaaaataaatttt |
2410072 |
T |
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