View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_36 (Length: 409)
Name: NF10140A_low_36
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_36 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 422725 - 423118
Alignment:
| Q |
20 |
agtatcatccatcaaaggttgtaaggaaatcctcttagcgaccnnnnnnnnn-cttgacaccaacaaatgctctcaaaatctatataccgtctaaaaaga |
118 |
Q |
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| T |
422725 |
agtatcatccatcaaaggttgtatgtaaatcctcttagcgaccaaaaaaaaaacttgacaccaacaaatgctctcaaaatctatataccgtctaaaaaga |
422824 |
T |
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| Q |
119 |
caaatgaattgcaaatatatgcatcctattaacaatctacacacttggagagaaagagatacagagcattctaaatcaaactttagacttcaaaagttat |
218 |
Q |
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| T |
422825 |
ccaatgtattacaaatatatgcatcctattaacaatctacacacttggagagaaagagatacaaagcattctaaataaaactttagacttcaaaagttat |
422924 |
T |
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| Q |
219 |
agaagacacacttgtatgtaccttagcctgtatgtgtcagtgagtacaaaaggaatgcaataatgaaaatggaaatagag---acaagttaatatagata |
315 |
Q |
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| T |
422925 |
agaagacacacttgtatgtaccttagcttgtatgtgtcagtgagtacaaaaggaatgcaataatgaaaatggaaatagagacaacaagttaatatagata |
423024 |
T |
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| Q |
316 |
tatgaaactaaccaattcttagaatcgtcaacatttgcaagaaaggaacccaatttgtcttccctttctttcttcttaatcttcttccccttga |
409 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
423025 |
tatgaaactaaccaattcttagaatcatcaacatttgcaagaaaggaacccaatttgtcttccctttctttcttcttaatcttcttccccttga |
423118 |
T |
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