View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_360 (Length: 235)

Name: NF10140A_low_360
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_360
NF10140A_low_360
[»] chr4 (12 HSPs)
chr4 (3-226)||(4025194-4025417)
chr4 (6-224)||(4009966-4010184)
chr4 (5-226)||(4002267-4002488)
chr4 (5-218)||(3801562-3801775)
chr4 (6-218)||(3954360-3954555)
chr4 (7-226)||(3809984-3810203)
chr4 (5-226)||(3986963-3987184)
chr4 (5-218)||(4218619-4218832)
chr4 (5-121)||(3817657-3817773)
chr4 (5-121)||(3919691-3919807)
chr4 (5-121)||(3932915-3933031)
chr4 (3-61)||(3963209-3963267)
[»] chr5 (1 HSPs)
chr5 (11-226)||(13397918-13398133)
[»] scaffold1360 (1 HSPs)
scaffold1360 (5-62)||(1910-1967)
[»] chr8 (4 HSPs)
chr8 (3-61)||(7069135-7069193)
chr8 (5-61)||(7075641-7075697)
chr8 (3-61)||(7036263-7036321)
chr8 (3-59)||(7081692-7081748)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 4025417 - 4025194
Alignment:
Q  3 ttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025417 ttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttt 4025318  T
Q  103 tttggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025317 tttggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattca 4025218  T
Q  203 acaaatgggttgtctagttatatt 226  Q
     |||||||||||||||||||||||    
T  4025217 ccaaatgggttgtctagttatatt 4025194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 4010184 - 4009966
Alignment:
Q  6 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 105  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  4010184 gtgtcattggaatttggggcatgggaagtattggcaagacaactattgcaggagaaatttttaaccaaaattgctctgaatatgaaggttgttgtttttt 4010085  T
Q  106 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaaca 205  Q
    || ||||||||| ||  |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||  ||    
T  4010084 ggaaaaggtaagcgagcaattaggaagacatggaagaacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgcca 4009985  T
Q  206 aatgggttgtctagttata 224  Q
    ||||||||||||| |||||    
T  4009984 aatgggttgtctaattata 4009966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 4002488 - 4002267
Alignment:
Q  5 cgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttt 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | || |||||||||||||||||||| ||||||||    
T  4002488 cgtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttttaaccgaagttgctctgaatatgaaggtttttgttttt 4002389  T
Q  105 tggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaac 204  Q
    ||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||  ||||| |    
T  4002388 tggaaaaggtaagtgaagaatcaggaaggcatggaataacatttttaaaagaaaagcttttttctacactattagcagaagatgtgaaaattaattcacc 4002289  T
Q  205 aaatgggttgtctagttatatt 226  Q
    ||||||| |||||| |||||||    
T  4002288 aaatgggctgtctaattatatt 4002267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 3801775 - 3801562
Alignment:
Q  5 cgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttt 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||| ||| ||||||||| ||||||||||||     
T  3801775 cgtgttattggaatttggggtatgggcggtattggcaagacaactattgcagaagaaatatttaaccaaaatcgctttgaatatgatggttgttgtttta 3801676  T
Q  105 tggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaac 204  Q
    || |||| || |||   ||||||||||| | |||||||||| |||  |||||||| ||||||||||  ||||||   ||||||||||||||||||||| |    
T  3801675 tgtcaaatgtgagtttggaattaggaaggcgtggaataacaatttaaaaagaaaagcttttttctaacctattaaatgaagatgtgaaaatcgattcacc 3801576  T
Q  205 aaatgggttgtcta 218  Q
    ||||||||||||||    
T  3801575 aaatgggttgtcta 3801562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 3954360 - 3954555
Alignment:
Q  6 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| | || ||||||||||||||||||||||||||||||    
T  3954360 gtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttataaccgaagttgctctgaatatgaaggttgttgtttttt 3954459  T
Q  106 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaaca 205  Q
    ||||||||| ||||| ||||||||||| || |                 ||| | |||||||| | ||||||||||||||||||||||||||||||| ||    
T  3954460 ggcaaaggtgagtgacgaattaggaaggcacg-----------------gaacagcttttttcaacactattagcagaagatgtgaaaatcgattcacca 3954542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 3810203 - 3809984
Alignment:
Q  7 tgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttttg 106  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||  ||||| | ||| | |||| ||| ||||||||||| ||||||||||| |||    
T  3810203 tgttatcggaatttggggtatgggtggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttg 3810104  T
Q  107 gcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaacaa 206  Q
    | ||||||||||||||| |||  ||||||||||||    | ||| ||| | ||||||||||||| |||||| ||||||||||||||||| ||| || |||    
T  3810103 gaaaaggtaagtgaagagttaacaagacatggaatggattctttaaaaaataaacttttttctaaactattggcagaagatgtgaaaattgatacaccaa 3810004  T
Q  207 atgggttgtctagttatatt 226  Q
    || ||||| ||||| |||||    
T  3810003 attggttgcctagtgatatt 3809984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 3987184 - 3986963
Alignment:
Q  5 cgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttt 104  Q
    ||||| ||||||||||||||||||   || |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  3987184 cgtgtgattggaatttggggtatgcctggcattggcaagacaactattgcagaagaaatttttaaccaaaatcgctctgaatatgatggttgttgttttt 3987085  T
Q  105 tggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaac 204  Q
    |||||||||| |||||| | |||  |  ||||||||||  || ||| |||||||  |||||| ||| | |||| || |||||||||||||| ||| || |    
T  3987084 tggcaaaggtgagtgaaaagttaaaattacatggaatagaatctttaaaagaaaccctttttactaaaatattggccgaagatgtgaaaattgatacacc 3986985  T
Q  205 aaatgggttgtctagttatatt 226  Q
    |||| ||||||| ||| |||||    
T  3986984 aaataggttgtccagtgatatt 3986963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 4218832 - 4218619
Alignment:
Q  5 cgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttt 104  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||| | ||| | |||| ||| ||||||||||| ||||||||||||     
T  4218832 cgtgttattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttta 4218733  T
Q  105 tggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaac 204  Q
    || |||| || |||   | ||||  ||| | ||||||||||||||| |||||||  ||||||||||  ||||||   ||||||||||||||||||||| |    
T  4218732 tgtcaaatgtgagtttgggattacaaagtcgtggaataacatttttaaaagaaatgcttttttctaacctattaaatgaagatgtgaaaatcgattcatc 4218633  T
Q  205 aaatgggttgtcta 218  Q
    ||||||||||||||    
T  4218632 aaatgggttgtcta 4218619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 3817773 - 3817657
Alignment:
Q  5 cgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttt 104  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| |    
T  3817773 cgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttct 3817674  T
Q  105 tggcaaaggtaagtgaa 121  Q
    ||| |||||| ||||||    
T  3817673 tggaaaaggtcagtgaa 3817657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 3919691 - 3919807
Alignment:
Q  5 cgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttt 104  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| |    
T  3919691 cgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttct 3919790  T
Q  105 tggcaaaggtaagtgaa 121  Q
    ||| |||||| ||||||    
T  3919791 tggaaaaggtcagtgaa 3919807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 3932915 - 3933031
Alignment:
Q  5 cgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttt 104  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| |    
T  3932915 cgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttct 3933014  T
Q  105 tggcaaaggtaagtgaa 121  Q
    ||| |||||| ||||||    
T  3933015 tggaaaaggtcagtgaa 3933031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 3963209 - 3963267
Alignment:
Q  3 ttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaa 61  Q
    |||||||| |||| |||||||||||||| |||||||||||||||||  |||| ||||||    
T  3963209 ttcgtgttgttgggatttggggtatgggtggtattggcaagacaacccttgcagaagaa 3963267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 13398133 - 13397918
Alignment:
Q  11 attggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttttggcaa 110  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||    
T  13398133 attggtatttggggtatgggaggtattggaaagacaactattgccgaagaaatttttaatcaaatttgttctgaatatgaaggatgttgttttttggcaa 13398034  T
Q  111 aggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaacaaatgg 210  Q
    |||| ||||||||||||||||| ||||||||| | ||||| |||||||| ||| |||||| |||||||||||||||||| |||||||||||| |||||||    
T  13398033 aggtgagtgaagaattaggaaggcatggaatagcgtttttaaaagaaaagcttgtttctacactattagcagaagatgtaaaaatcgattcatcaaatgg 13397934  T
Q  211 gttgtctagttatatt 226  Q
    |||| |||||||||||    
T  13397933 gttgcctagttatatt 13397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 1910 - 1967
Alignment:
Q  5 cgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaa 62  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||    
T  1910 cgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaa 1967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 7069193 - 7069135
Alignment:
Q  3 ttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaa 61  Q
    |||||| ||||||||||||||||||| | |||||||| |||||||||||||| ||||||    
T  7069193 ttcgtgctattggaatttggggtatgagtggtattggaaagacaactattgcagaagaa 7069135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 7075697 - 7075641
Alignment:
Q  5 cgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaa 61  Q
    |||||| |||||||||||||||||  ||||||||| || ||||||||||| ||||||    
T  7075697 cgtgttcttggaatttggggtatgccaggtattggtaaaacaactattgctgaagaa 7075641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 7036263 - 7036321
Alignment:
Q  3 ttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaa 61  Q
    |||||||| |||||||||||||||||   |||||||| || ||||||||||| ||||||    
T  7036263 ttcgtgttcttggaatttggggtatgcctggtattggtaaaacaactattgctgaagaa 7036321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 7081748 - 7081692
Alignment:
Q  3 ttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaag 59  Q
    |||||| ||||||||||||||| ||| | |||||||| ||||||| ||||| |||||    
T  7081748 ttcgtgctattggaatttgggggatgagtggtattggaaagacaattattgtcgaag 7081692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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