View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_365 (Length: 234)
Name: NF10140A_low_365
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_365 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 30315988 - 30315791
Alignment:
| Q |
18 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30315988 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcactatgagctatagttcc |
30315889 |
T |
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| Q |
118 |
ttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttcccttt |
215 |
Q |
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| T |
30315888 |
ttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttcccttt |
30315791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 30287447 - 30287257
Alignment:
| Q |
18 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcc |
117 |
Q |
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| T |
30287447 |
ttattcttgattaatttattcatagtagaaa-ggaggaactctagtta------caagataatgccgttttattcttttctcattatgagctatagttcc |
30287355 |
T |
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| Q |
118 |
ttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttcccttt |
215 |
Q |
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| T |
30287354 |
ttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttcccttt |
30287257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 30305121 - 30304925
Alignment:
| Q |
18 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcc |
117 |
Q |
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|||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| ||| |||||||| ||| |
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| T |
30305121 |
ttattcttgattcagttattcatagtagaaa-ggtggaactctagttatagttacaagataatgccgttttattcatcgctcattattagctatagctcc |
30305023 |
T |
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| Q |
118 |
ttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttcccttt |
215 |
Q |
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| T |
30305022 |
atatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttcccttt |
30304925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 30300323 - 30300133
Alignment:
| Q |
18 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcc |
117 |
Q |
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||||||||||||||||||||||| || ||| ||||||||||||| || ||||||| || ||||||||||| ||||||||||||||||| ||| |
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| T |
30300323 |
ttattcttgattaatttattcatggtggaaa-ggtggaactctagata------caagatattgccgttttattctctgctcactatgagctatgactcc |
30300231 |
T |
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| Q |
118 |
ttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttcccttt |
215 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| |
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| T |
30300230 |
ttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtctctggcttcgaccttcttcccttt |
30300133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 30292467 - 30292291
Alignment:
| Q |
21 |
ttcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcctta |
120 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||| |
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| T |
30292467 |
ttcttgattaatttattcatagtaggaaag-tggaactctagttatagttacaagctaatgccgttttattcattgctcactatgag---------ctta |
30292378 |
T |
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| Q |
121 |
cagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttcccttt |
215 |
Q |
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|||||||| ||||||| | |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292377 |
gagcatacaagcataat--------aagcattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcgaccttcttcccttt |
30292291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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