View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_372 (Length: 234)
Name: NF10140A_low_372
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_372 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 31306549 - 31306339
Alignment:
| Q |
11 |
gatggacatcaaggaaagatatattgaataaacttacttgctgctgctccttagccatgtgttggctaacagatgtctgcagagctcctgtgcaggatgc |
110 |
Q |
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| T |
31306549 |
gatggaaatcaaggaaagatatattgaataaacttacttgctgctgctccttagccatgtgttggctaacagatgtctgcagagctcctgtgcaggatgc |
31306450 |
T |
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| Q |
111 |
taactcccttcggaaactttcatcattgtcaccggaagagtttaaaagctcaaataaatggtcaaagaggttgctttcccccttgtgttcaagagaatat |
210 |
Q |
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| T |
31306449 |
taactcccttcggaaactttcatcattgtcaccggaagagtttaaaagctcaaataaatggtcaaagaggttgctttcccccttgtgttcaagagaatat |
31306350 |
T |
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| Q |
211 |
gtctatgctac |
221 |
Q |
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|||| |||||| |
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| T |
31306349 |
gtctgtgctac |
31306339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 43982790 - 43982639
Alignment:
| Q |
58 |
tccttagccatgtgttggctaacagatgtctgcagagctcctgtgcaggatgctaactcccttcggaaactttcatcattgtcaccggaagagtttaaaa |
157 |
Q |
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| T |
43982790 |
tcctttgccaggtgttgactaactgatgtctgtaaagctcctgtgcaagatgccaattctcttggaaaaccctcatcattcttggtggaagaatttaaga |
43982691 |
T |
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| Q |
158 |
gctcaaataaatggtcaaagaggttgctttcccccttgtgttcaagagaata |
209 |
Q |
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| T |
43982690 |
gctcaaatagatgatcaaaaagattgctttcacccttgtgctcaagagaata |
43982639 |
T |
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