View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_373 (Length: 234)
Name: NF10140A_low_373
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_373 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 12123989 - 12123760
Alignment:
| Q |
3 |
aatattcaccacaagaaaaaggatggagacctctccataaaataatatcttaagtctttctttttactagttattttaaactaccaaaatttagttaaga |
102 |
Q |
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| T |
12123989 |
aatattctcaacaagaaaaaggatggagacctctccataaaataatatcttaagtctttcgttttactagttattttaaactaccaaaatttaggtaaga |
12123890 |
T |
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| Q |
103 |
ggttgagaatacaaatagtttannnnnnnnnagaaagataatgnnnnnnnnnngtaagctcttcatttaccaatttgattgatccttttgaacttac--- |
199 |
Q |
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| T |
12123889 |
ggttgagaatagaaatag-ttatttttttttagaaagataatgaaaaaaaaaagtaagctcttcatttatcaatttgattgatccttttgaacttactaa |
12123791 |
T |
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| Q |
200 |
--caaagaaaaaacgtcttattcgtttatat |
228 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
12123790 |
agaaaagaaaaaacatcttattcgtttatat |
12123760 |
T |
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