View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_374 (Length: 233)

Name: NF10140A_low_374
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_374
NF10140A_low_374
[»] chr1 (3 HSPs)
chr1 (21-213)||(7386421-7386613)
chr1 (54-190)||(19991215-19991350)
chr1 (107-191)||(19322649-19322733)
[»] chr5 (3 HSPs)
chr5 (78-214)||(4925268-4925404)
chr5 (54-214)||(35205787-35205947)
chr5 (73-214)||(35211203-35211344)
[»] chr2 (2 HSPs)
chr2 (119-215)||(39375508-39375604)
chr2 (22-60)||(39375627-39375665)
[»] chr3 (2 HSPs)
chr3 (54-212)||(52314493-52314651)
chr3 (54-210)||(53464903-53465059)
[»] chr4 (2 HSPs)
chr4 (57-213)||(23563558-23563714)
chr4 (85-213)||(48265287-48265415)
[»] chr8 (1 HSPs)
chr8 (98-215)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (93-212)||(45888825-45888944)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 7386421 - 7386613
Alignment:
Q  21 ctattaattaaaagaaataaaactcaaagtattacaaaatctaacaattactggaaaaggaacgtagtaatacattgctaccatgtatagtttaactact 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  7386421 ctattaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaactact 7386520  T
Q  121 caattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 213  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  7386521 caattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctcttag 7386613  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 19991350 - 19991215
Alignment:
Q  54 acaaaatctaacaattactggaaaaggaacgtagtaatacattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 153  Q
    |||||||| ||||||| | |||||||||| |||||||| ||||  ||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  19991350 acaaaatc-aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatga 19991252  T
Q  154 cacgagagcattggttagtgtgataccacccatatgg 190  Q
    ||| | ||||||||  |||||||||||||||||||||    
T  19991251 cacaaaagcattgggcagtgtgataccacccatatgg 19991215  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
Q  107 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga 191  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| | ||||||| ||| ||||||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

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Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 4925268 - 4925404
Alignment:
Q  78 aggaacgtagtaatacattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgat 177  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  4925268 aggaacgtagtaatgcattgttaccatgtatagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgat 4925367  T
Q  178 accacccatatggacagacgatgtgtatgctcttagt 214  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4925368 accacccatatggacagacgatgcgtatgctcttagt 4925404  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 214
Target Start/End: Original strand, 35205787 - 35205947
Alignment:
Q  54 acaaaatctaacaattactggaaaaggaacgtagtaatacattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 153  Q
    ||||||||  |||||| | |||||||||| | |||||| |||| || ||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||    
T  35205787 acaaaatcagacaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatga 35205886  T
Q  154 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagt 214  Q
    ||| | |||||||| || ||||||||||||||||||  ||| ||||||| |||||||||||    
T  35205887 cacaaaagcattgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctcttagt 35205947  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 35211344 - 35211203
Alignment:
Q  73 ggaaaaggaacgtagtaatacattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt 172  Q
    |||||||||| | |||||| |||| |||||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | |||||||| || |    
T  35211344 ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat 35211245  T
Q  173 gtgataccacccatatggacagacgatgtgtatgctcttagt 214  Q
    |||||||||||||||||  |||  |||||| |||||||||||    
T  35211244 gtgataccacccatatgtgcaggtgatgtgcatgctcttagt 35211203  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 39375604 - 39375508
Alignment:
Q  119 ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagtg 215  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctcttagtg 39375508  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 39375665 - 39375627
Alignment:
Q  22 tattaattaaaagaaataaaactcaaagtattacaaaat 60  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  39375665 tattaattaaaagaaataaaacttaaagtattacaaaat 39375627  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 52314493 - 52314651
Alignment:
Q  54 acaaaatctaacaattactggaaaaggaacgtagtaatacattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 153  Q
    ||||||||  |||||| | |||||||||| |||||||| |||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  52314493 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 52314592  T
Q  154 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctctta 212  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||||    
T  52314593 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctctta 52314651  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 53464903 - 53465059
Alignment:
Q  54 acaaaatctaacaattactggaaaaggaacgtagtaatacattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 153  Q
    ||||||||  |||||| | |||||||||| |||||||| |||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  53464903 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 53465002  T
Q  154 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 210  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||    
T  53465003 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 53465059  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 213
Target Start/End: Original strand, 23563558 - 23563714
Alignment:
Q  57 aaatctaacaattactggaaaaggaacgtagtaatacattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacac 156  Q
    |||||| |||||| | |||||||||| |||||||| |||| | |||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  23563558 aaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac 23563657  T
Q  157 gagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 213  Q
     | ||||||||  |||||||||||||||||||   ||| ||||||| ||||||||||    
T  23563658 aaaagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctcttag 23563714  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 48265287 - 48265415
Alignment:
Q  85 tagtaatacattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc 184  Q
    ||||||| |||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | ||||||||  |||||||||||||||    
T  48265287 tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc 48265386  T
Q  185 atatggacagacgatgtgtatgctcttag 213  Q
    |||||  ||| ||||||| ||| ||||||    
T  48265387 atatgtgcaggcgatgtgcatgttcttag 48265415  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 40278604 - 40278487
Alignment:
Q  98 ctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg 197  Q
    |||||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | ||||||||  ||||||||||||||||||||  ||| ||    
T  40278604 ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg 40278505  T
Q  198 atgtgtatgctcttagtg 215  Q
    ||||||||||||| ||||    
T  40278504 atgtgtatgctctaagtg 40278487  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 45888825 - 45888944
Alignment:
Q  93 cattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggac 192  Q
    |||||| || ||| ||| |||| |||||||  ||||| |||||||||| | | || |||||||| | ||||||||||| |||  ||||||| || | |||    
T  45888825 cattgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttgac 45888924  T
Q  193 agacgatgtgtatgctctta 212  Q
     |||||||||||||||||||    
T  45888925 cgacgatgtgtatgctctta 45888944  T

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