View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_38 (Length: 408)
Name: NF10140A_low_38
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Complemental strand, 44187662 - 44187268
Alignment:
| Q |
7 |
ttggtgttaaggaatcctgggttagactcttcaatgttgatccttttcccattcaacattctactgaacctgttttggcttgcattccaaatcctatcgg |
106 |
Q |
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| T |
44187662 |
ttggtgttaaggaatcctgggttagactcttcaatgttgatccttttcccattcaacattctactgaaccttttttggcttgcattccaaatcctaccgg |
44187563 |
T |
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| Q |
107 |
agcttggaaagagggcaatatattcttcagaacaccaaattatgaactagcttgtttagacttgactaccggggtgattgaggagtttggtgttagagta |
206 |
Q |
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| T |
44187562 |
agcttggaaagagggcaatatattcttcagaacaccaaattatgaactagcttgtttagacttgactaccggggtgattgaggagattggtgttagagta |
44187463 |
T |
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| Q |
207 |
gaaaattattgttgccaaatggtagtttacaagaaaaaccttcttccgtttagagttgcagacaattaatttcttttgtagcctttgtgtggagttctca |
306 |
Q |
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| T |
44187462 |
gaaaattattgttgccaaatggtagtttacaagaaaaaccttctttcgtttggagttgcagacaattaatttcttttgtagcctttgtgtggagttctca |
44187363 |
T |
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| Q |
307 |
ccatcaaggtttatgagtctagttattaggatttaatatttgattgcaaagttgaactttatgaagttacttatatgcaaaatggcttgtcagttg |
402 |
Q |
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| T |
44187362 |
ccct-aaggcttatgagtctagttcttaggatttaatattagattgcaaagttgaactttatgaagttacttatatgccaaacgacttgtcagttg |
44187268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 402
Target Start/End: Complemental strand, 19162988 - 19162856
Alignment:
| Q |
271 |
attaatttcttttgtagcctttgtgtggagttctcaccatcaaggtttatgagtctagttattaggatttaatatttgattg-caaagttgaactttatg |
369 |
Q |
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| T |
19162988 |
attaattgcttttatagcctttttgtgaagttttcaccctcaaggtttatgagtctagttcttaggatttgatattctattgcctaagttgaactttctg |
19162889 |
T |
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| Q |
370 |
aagttacttatatgcaaaatggcttgtcagttg |
402 |
Q |
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| T |
19162888 |
aagttgcttatatgcaaactggcttgttagttg |
19162856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 232 - 353
Target Start/End: Complemental strand, 28867005 - 28866885
Alignment:
| Q |
232 |
tttacaagaaaaaccttcttccgtttagagttgcagacaattaatttcttttgtagcctttgtgtggagttctcaccatcaaggtttatgagtctagtta |
331 |
Q |
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|||| ||||||||||||||||| ||| ||||| |||||||||||| |||||||||||||||||||||| | ||| |||||| ||| |||||||||| |
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| T |
28867005 |
tttataagaaaaaccttcttccatttcgagttatagacaattaattgtatttgtagcctttgtgtggagtttttaccctcaagg-ttaggagtctagttc |
28866907 |
T |
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| Q |
332 |
ttaggatttaatatttgattgc |
353 |
Q |
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| T |
28866906 |
ttaggatttgatatttcattgc |
28866885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 353
Target Start/End: Original strand, 28995192 - 28995312
Alignment:
| Q |
232 |
tttacaagaaaaaccttcttccgtttagagttgcagacaattaatttcttttgtagcctttgtgtggagttctcaccatcaaggtttatgagtctagtta |
331 |
Q |
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||||||||||||| |||||||| ||| ||||| |||||||||||| | ||| ||||||||||||||| || ||||| |||||| | | |||||||||| |
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| T |
28995192 |
tttacaagaaaaatcttcttccatttggagttatagacaattaattgcatttctagcctttgtgtggaattttcaccctcaagg-tcaggagtctagttc |
28995290 |
T |
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| Q |
332 |
ttaggatttaatatttgattgc |
353 |
Q |
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||||||||| |||||| ||||| |
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| T |
28995291 |
ttaggattttatatttcattgc |
28995312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 19163166 - 19163077
Alignment:
| Q |
151 |
aactagcttgtttagacttgactaccggggtgattgaggagtttggtgttagagtagaaaattattgttgccaaatggtagtttacaagaaaa |
243 |
Q |
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||||||||||||| || || ||||||||| ||||||||||| ||||||||| || |||| | | |||| ||| |||||||||||||||||| |
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| T |
19163166 |
aactagcttgttttgatttaactaccgggatgattgaggagattggtgttaaagcagaacaattttgt---caagtggtagtttacaagaaaa |
19163077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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