View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_391 (Length: 230)
Name: NF10140A_low_391
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_391 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 48484180 - 48484404
Alignment:
| Q |
6 |
acgatgattatagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttgtccattttgcataa |
105 |
Q |
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| T |
48484180 |
acgatgattatagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttgtccattttgcataa |
48484279 |
T |
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| Q |
106 |
actggttcatatttttctgaggcaataaagtaaaagtaaactaagtttctccatttcaaaaatgtatttgaaagagaacatgagactgaaatgcaccata |
205 |
Q |
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| T |
48484280 |
actggttcatatttttctgaggcaataaagtaaaagtaaactaagtttctccatttcaaaaatgtatttgaaagagaacataagactgaaatgtaccata |
48484379 |
T |
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| Q |
206 |
agacctgatcatgtacaagaaatgg |
230 |
Q |
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| T |
48484380 |
agacctgatcatgtacaagaaatgg |
48484404 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 10036419 - 10036323
Alignment:
| Q |
20 |
acctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttgtccattttgcataaactggttcata |
116 |
Q |
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| T |
10036419 |
acctgttgcagatgataattttgttatcctcatagtcttcgatccatctacaaatagcacatctttctgtcgtccattttgcatgaactggctcata |
10036323 |
T |
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