View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_393 (Length: 230)
Name: NF10140A_low_393
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_393 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 33441219 - 33441441
Alignment:
| Q |
3 |
ggtaaagcactattaacccataatttaatctgtatttactgatagtgtaaaactattttacacatacgcccaatcaaatcatattacttaaacattttag |
102 |
Q |
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| T |
33441219 |
ggtaaagcactgttaacccataatttaatttgtatttactgatagtgtaaaaatattttacacatacgcccaaacaaatcatattacttaaacattttag |
33441318 |
T |
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| Q |
103 |
tacttaacctataaaaatgacattgtagtgtggctttgcattagattagatgtacgtgtnnnnnnntcttatgattaatacttagatatgacttaagaat |
202 |
Q |
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| T |
33441319 |
tacttaacctataaaaatgacattgtagtgtggctttg-----aattagatgtacgtgtaaaaaaatcttatgattaatacttagatatgacttaagaat |
33441413 |
T |
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| Q |
203 |
gatgctttgatatgataaataaatgtga |
230 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33441414 |
gatgctttgatatgataaataaatgtga |
33441441 |
T |
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