View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_394 (Length: 230)
Name: NF10140A_low_394
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_394 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 32902600 - 32902829
Alignment:
| Q |
1 |
agattaaatgcatatagaccatgataaatttgggaggaatgctct-aatttaaccattgaaaaatgtggtccttgatggaccaattttcttacgggtcaa |
99 |
Q |
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| T |
32902600 |
agattaaatacatataaaccatcataaatttgggaggaatgctcttaatttaaccattgaaaaatgtggtccatggtggaccaattttcttacgggtcaa |
32902699 |
T |
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| Q |
100 |
attcacacggaaccggcaaacctatgacctttgtctgagttactgcattatttctttgcaatctatttgtaggattggccaatactatcatggttgagga |
199 |
Q |
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| T |
32902700 |
attcatacggaaccggcaaacctatgacctttgtc-gaattgctgcactatttctttgcaatctatttgcaggattggccaatactatcatggttgagga |
32902798 |
T |
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| Q |
200 |
cctttcatgttaaggtcctagctcacagtga |
230 |
Q |
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| T |
32902799 |
cctttcatgttaaggtcctagctcacagtga |
32902829 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 44806973 - 44806929
Alignment:
| Q |
55 |
attgaaaaatgtggtccttgatggaccaattttcttacgggtcaa |
99 |
Q |
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| T |
44806973 |
attgaaaaatgtggtccatgatggaccaattttcttacgggtcaa |
44806929 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 14094190 - 14094240
Alignment:
| Q |
6 |
aaatgcatatagaccatgataaatttgggaggaatgctctaatttaaccat |
56 |
Q |
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|||| ||||||||||||| |||| ||||||||||||||||||| ||||||| |
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| T |
14094190 |
aaatacatatagaccatggtaaacttgggaggaatgctctaatctaaccat |
14094240 |
T |
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