View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_399 (Length: 230)
Name: NF10140A_low_399
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_399 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 16697972 - 16697852
Alignment:
| Q |
1 |
acacattgagtgccttggcttgcaacatgtgtcattgagatggaagaaggaattgtccttggtttgctggaaatttttcattcgatactgcttctgcact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16697972 |
acacattgagtgccttggcttgcaacatgtgtcattgaaatagaagaaggaattgtccttggtttgctggaaatttttcattcgatactgcttctgcact |
16697873 |
T |
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| Q |
101 |
taagtatcaattctagggaat |
121 |
Q |
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| T |
16697872 |
taagtattaattctagggaat |
16697852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 16697472 - 16697355
Alignment:
| Q |
113 |
ctagggaatgctctagtctatggcagaatagctcctttgtattgataaaatctatgggagaataatcccatttccctatctgttggtgataaagtgcata |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
16697472 |
ctagtgaatgctctagtctatggcagaatagctcctttgtattgataaaatctatgggagaataatcccatttctctatctgttggtgataaaatgcata |
16697373 |
T |
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| Q |
213 |
aagataggttgtgtatga |
230 |
Q |
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| T |
16697372 |
aagataggttgtgtatga |
16697355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 102817 - 102772
Alignment:
| Q |
118 |
gaatgctctagtctatggcagaatagctcctttgtattgataaaat |
163 |
Q |
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| T |
102817 |
gaatgatctagtctatggcagaatagctccttcgtatcgataaaat |
102772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 103345 - 103225
Alignment:
| Q |
1 |
acacattgagtgccttggcttgcaacatgtgtcattgagatggaagaaggaattgtccttggtttgctggaaatttttcattcgatactgcttctgcact |
100 |
Q |
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||||||| | ||||||| || ||||| | |||||||| ||||||||| |||| | | ||| ||| | |||| |||||||| ||||||| ||||||||| |
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| T |
103345 |
acacatttaatgccttgtatttcaacaggcgtcattgaaatggaagaataaattatacctggcttgtttgaaaattttcatttgatactgattctgcact |
103246 |
T |
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| Q |
101 |
taagtatcaattctagggaat |
121 |
Q |
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||||| ||||||||||||| |
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| T |
103245 |
atagtattaattctagggaat |
103225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 18894325 - 18894281
Alignment:
| Q |
158 |
taaaatctatgggagaataatcccatttccctatctgttggtgat |
202 |
Q |
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| T |
18894325 |
taaaatctaagggcgaataatcccatttccctatcggttggtgat |
18894281 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 38227512 - 38227420
Alignment:
| Q |
1 |
acacattgagtgccttggcttgcaacatgtgtcattgagatggaagaaggaattgtccttggtttgctggaaatttttcattcgatactgcttct |
95 |
Q |
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||||||| | |||| |||||||||||| | |||| || |||||||||| | | |||| ||||||||||||||||| ||||||||||||||||| |
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| T |
38227512 |
acacatttactgccctggcttgcaacaggcatcat-gaaatggaagaagaattattcctgggtttgctggaaatttt-cattcgatactgcttct |
38227420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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