View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_4 (Length: 606)
Name: NF10140A_low_4
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Complemental strand, 43410709 - 43410122
Alignment:
| Q |
1 |
cattgcttgcaagctaaacctgattttttcatccgcgaaagttgccttcactctgaaagcacccctttctaggagtgttgatgatgaagaattgttgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43410709 |
cattgcttgcaagctaaacctgattttttcatccgcgaaagttgccttcactctgaaagcacccctttctaggagtgttgatgatgaagaattgttgttg |
43410610 |
T |
|
| Q |
101 |
ttccaggccacagttggtcttggaggtaggatttgattattgttgttgttgaaatgtagcagtaattgcttagtatcaagatcctcctgcagctgctgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43410609 |
ttccaggccacagttggtcttggaggtaggatttgattattgttgttg---aaatgtagcagtaattgcttagtatcaagatcctcctgcagctg---at |
43410516 |
T |
|
| Q |
201 |
ggtagtcctggatattaatattagatgcatgcatgaaggcatgatcaactcctaaaggagctcctgtagggttttcggtcatcacaacatgatgatggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43410515 |
ggtagtcctggatattaatattagatgcatgcatgaaggcatgatcaactcctaaaggagctcctgtagggttttctgtcatcacaacatgatgatggtt |
43410416 |
T |
|
| Q |
301 |
aatggcagtagtagtagtcataggtaatttgtttcctgcatgggtctgactgcaagcagagggtggggatttcaaactagtaactattccatctccatgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43410415 |
aatggcagtagtagtagtcataggtaatttgtttcctgcatgggtctgactgcaagcagagggtggggatttcaaactagtaactattccatctccatgg |
43410316 |
T |
|
| Q |
401 |
ttattattatagaagctattgttgttgttgttatcattaccatcaccaccattagcagttgcagtgctcaactctgggaagctggcatagaaagagccaa |
500 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43410315 |
ttattattatagaagctatt---gttgctgttatcattaccatcaccaccattagcagttgcattgctcaactctgggaagctggcatagaaagagccaa |
43410219 |
T |
|
| Q |
501 |
tctgtatggcaccctctgcaccttgaacagaatcaatcacaagttgtagcttctttaaagagtggcccaccttctttatttttcttgatgtccatct |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
43410218 |
tctgtatggcaccctctgcaccttgaacagaatcaatcacaagttgtagcttctttaaagagtggcccaccttctttatttttcttgaaggccatct |
43410122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University