View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_40 (Length: 407)
Name: NF10140A_low_40
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 44253507 - 44253262
Alignment:
| Q |
2 |
cacataagtaaagtacttggtatttaactcttgaattttcaatgggttgtggacttcgacaggggattcgttgtctccannnnnnnncaatgtgg-caaa |
100 |
Q |
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| T |
44253507 |
cacataagtaaagtacttggtatttaactcttgaattttcaatgggttgtggacttcgacaggggattcgttgtctccattttttttcaatgtggttaaa |
44253408 |
T |
|
| Q |
101 |
ggtctcaatttgttgtttgctaaagcaataaggttgtgtaagtttttgtgaatcgtaaaactta-nnnnnnnnnnnngaaagaatcgtaaaacttatata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44253407 |
ggtctcaatttgttgtttgctaaagcaataaggttgtgtaagttattgtgaatcgtaaaacttatatttttttttttgaaagaatcgtaaaacttatata |
44253308 |
T |
|
| Q |
200 |
aatcgtagcaactttaagatagaagttggtaaacttgaaaattatg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44253307 |
aatcgtagcaactttaagatagaagttggtaaacttgaaaattatg |
44253262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 44251562 - 44251459
Alignment:
| Q |
290 |
aataaatataaaataattctcgtaagaaattttgttaagcattttataatgttttcaaaaaatgaaaataaataaggtcaacttaattagcatgtggatc |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44251562 |
aataaatataaaataattctcgtaagaaattttgttaagcattttataatgttttcaaaaaatgaaaataaataaggtcaacttaattaacatgtggatc |
44251463 |
T |
|
| Q |
390 |
gata |
393 |
Q |
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|||| |
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| T |
44251462 |
gata |
44251459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 362
Target Start/End: Original strand, 44051856 - 44051887
Alignment:
| Q |
331 |
ttttataatgttttcaaaaaatgaaaataaat |
362 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44051856 |
ttttataatgttttcaaaaaatgaaaataaat |
44051887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 12053964 - 12053918
Alignment:
| Q |
309 |
tcgtaagaaattttgttaagcattttataatgttttcaaaaaatgaa |
355 |
Q |
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||||||||||||||||| | |||| |||||| ||||||||||||||| |
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| T |
12053964 |
tcgtaagaaattttgttgaacattctataatattttcaaaaaatgaa |
12053918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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