View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_403 (Length: 230)

Name: NF10140A_low_403
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_403
NF10140A_low_403
[»] chr5 (3 HSPs)
chr5 (33-169)||(35854545-35854681)
chr5 (35-150)||(10521323-10521438)
chr5 (96-169)||(35802504-35802577)
[»] chr4 (6 HSPs)
chr4 (9-145)||(55705908-55706044)
chr4 (37-139)||(54304257-54304359)
chr4 (33-145)||(45876742-45876854)
chr4 (33-139)||(47293489-47293595)
chr4 (39-144)||(45858817-45858922)
chr4 (52-145)||(56208556-56208649)
[»] chr8 (2 HSPs)
chr8 (8-157)||(7972057-7972206)
chr8 (10-139)||(7961689-7961818)
[»] chr2 (1 HSPs)
chr2 (39-139)||(24357488-24357588)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 35854681 - 35854545
Alignment:
Q  33 tctgttttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 132  Q
    |||||||||||| ||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35854681 tctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccg 35854582  T
Q  133 gtccaaagcctcctatgttcaacctttttcgtcttgt 169  Q
    ||||||| ||||| |||| ||||||||||| ||||||    
T  35854581 gtccaaatcctcccatgtgcaacctttttcatcttgt 35854545  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 10521438 - 10521323
Alignment:
Q  35 tgttttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggt 134  Q
    |||||||||| ||||||||||| |||||||| |||||||  ||||  ||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |    
T  10521438 tgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgat 10521339  T
Q  135 ccaaagcctcctatgt 150  Q
    ||||| ||||||||||    
T  10521338 ccaaatcctcctatgt 10521323  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 35802504 - 35802577
Alignment:
Q  96 agcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacctttttcgtcttgt 169  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||||| ||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgt 35802577  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 55706044 - 55705908
Alignment:
Q  9 tgagagctccacaataccaacttttctgttttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaa 108  Q
    |||||||||||||| |  ||| | |||||||||||| ||||| || ||||||||||  |||||||  ||||  |||||||||||||||||||||||||||    
T  55706044 tgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaa 55705945  T
Q  109 ccatgagatgttgcgtccttaccggtccaaagcctcc 145  Q
    |||||||||| |||||| ||||||||||||| |||||    
T  55705944 ccatgagatgctgcgtctttaccggtccaaaccctcc 55705908  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 54304359 - 54304257
Alignment:
Q  37 ttttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtcc 136  Q
    |||||||| ||||||||||||||||||||||||||||  |||| ||| ||||| ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  54304359 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 54304260  T
Q  137 aaa 139  Q
    |||    
T  54304259 aaa 54304257  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 45876742 - 45876854
Alignment:
Q  33 tctgttttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 132  Q
    ||||| |||||| ||||| || |||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  45876742 tctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccg 45876841  T
Q  133 gtccaaagcctcc 145  Q
    ||||||| |||||    
T  45876842 gtccaaaccctcc 45876854  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 47293595 - 47293489
Alignment:
Q  33 tctgttttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 132  Q
    |||||||||||| ||||||||||||||||||||||||||||  || |  ||||  ||||||||||||||||||||||||||||||  ||||||||||| |    
T  47293595 tctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttactg 47293496  T
Q  133 gtccaaa 139  Q
    |||||||    
T  47293495 gtccaaa 47293489  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 45858817 - 45858922
Alignment:
Q  39 ttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 138  Q
    |||||| ||||||||||||||||| ||||||||||  ||||  |||| |||||||||||||||||||| ||||||||||  ||| |||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  139 agcctc 144  Q
    | ||||    
T  45858917 accctc 45858922  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 56208556 - 56208649
Alignment:
Q  52 gccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcc 145  Q
    ||||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||| |||||  ||| || ||||||||| ||| |||||    
T  56208556 gccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaaaccctcc 56208649  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 7972057 - 7972206
Alignment:
Q  8 atgagagctccacaataccaacttttctgttttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaa 107  Q
    |||||||||||||||||  ||| | |||||||||||| | ||||||||||||||||||||||||||  ||||  ||||  ||||  |||||||| |||||    
T  7972057 atgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaa 7972156  T
Q  108 accatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacct 157  Q
    ||||| ||||  ||| || ||||||||||||| |||||| ||| ||||||    
T  7972157 accattagatactgcatctttaccggtccaaatcctcctctgtgcaacct 7972206  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 7961689 - 7961818
Alignment:
Q  10 gagagctccacaataccaacttttctgttttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaac 109  Q
    |||| ||||||||||  ||| | | |||||||||| ||||||||||||||||||||||||||||  ||    ||||| |||||||||||||| ||||||     
T  7961689 gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaat 7961788  T
Q  110 catgagatgttgcgtccttaccggtccaaa 139  Q
    ||| |||| |||| || ||||| |||||||    
T  7961789 cattagatattgcatctttaccagtccaaa 7961818  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 24357588 - 24357488
Alignment:
Q  39 ttgaggcatattggccttcaattttgctatagcaaccgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 138  Q
    |||||| ||||||||||||||||||||||| ||||  || |  || |  |||||||||||||||||||||||||| |||| ||| || ||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  139 a 139  Q
    |    
T  24357488 a 24357488  T

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