View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_404 (Length: 230)

Name: NF10140A_low_404
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_404
NF10140A_low_404
[»] chr2 (8 HSPs)
chr2 (20-220)||(2803204-2803404)
chr2 (136-210)||(33561499-33561573)
chr2 (136-208)||(30312825-30312897)
chr2 (111-213)||(13766795-13766899)
chr2 (136-209)||(29873586-29873659)
chr2 (167-208)||(36005930-36005971)
chr2 (136-220)||(2336660-2336744)
chr2 (167-211)||(31468797-31468841)
[»] chr5 (2 HSPs)
chr5 (106-220)||(10351209-10351325)
chr5 (136-208)||(36521946-36522018)
[»] chr6 (4 HSPs)
chr6 (136-213)||(8481962-8482039)
chr6 (136-203)||(5034876-5034943)
chr6 (136-177)||(27226675-27226716)
chr6 (136-208)||(6071168-6071240)
[»] chr4 (4 HSPs)
chr4 (111-189)||(42480533-42480611)
chr4 (167-213)||(22028412-22028458)
chr4 (136-208)||(34544142-34544215)
chr4 (144-220)||(23630348-23630424)
[»] chr1 (3 HSPs)
chr1 (136-208)||(1188638-1188710)
chr1 (167-213)||(32594761-32594807)
chr1 (136-209)||(1187413-1187486)
[»] chr8 (1 HSPs)
chr8 (136-213)||(4154326-4154402)
[»] chr7 (2 HSPs)
chr7 (171-220)||(7192786-7192835)
chr7 (167-208)||(21619095-21619136)
[»] chr3 (2 HSPs)
chr3 (136-177)||(260805-260846)
chr3 (111-188)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 2803404 - 2803204
Alignment:
Q  20 tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803404 tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt 2803305  T
Q  120 ctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctc 219  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  2803304 ctcacattgtttaaagaagtggaggttgaacattctataaaagagatgacccataaacttaatgtcttaacgttttgggtaaaagtgtgatgtccaactc 2803205  T
Q  220 a 220  Q
    |    
T  2803204 a 2803204  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 33561573 - 33561499
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgat 210  Q
    ||||||||||| |||| | |||||  |||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  33561573 aagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagtgtgat 33561499  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 30312825 - 30312897
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 208  Q
    |||||||||||||||| | |||||   |||||||||||||||| | |  ||||| ||||||||||||||||||    
T  30312825 aagtggaggttgaacactttataacttagatgacccataaacttatttccttaaggttttgggtaaaagtgtg 30312897  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 13766795 - 13766899
Alignment:
Q  111 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaa--gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 208  Q
    |||| |||||| ||||| |||| | |||||||||||||  ||| |||||||  ||||||||  |||||||||||| ||||| |||||| || ||| ||||    
T  13766795 gttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggttttgtgttaaaatgtg 13766894  T
Q  209 atgtc 213  Q
     ||||    
T  13766895 gtgtc 13766899  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 29873659 - 29873586
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 209  Q
    |||||||||||||||||| |||||  | || ||| |||||||||| || ||||| |||||| |||| |||||||    
T  29873659 aagtggaggttgaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtga 29873586  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 36005971 - 36005930
Alignment:
Q  167 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 208  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  36005971 gacccataaactcattgccttaaggttttgggtaaaagtgtg 36005930  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 2336660 - 2336744
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 220  Q
    |||||||||||||||| | |||||  |||| |||||||||| |||||| |||||  |||||||| ||  |||| |||||| ||||    
T  2336660 aagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactca 2336744  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 31468841 - 31468797
Alignment:
Q  167 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatg 211  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||    
T  31468841 gacccataaactcattgccttaaggttttgggtaagagtgtgatg 31468797  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 10351325 - 10351209
Alignment:
Q  106 tgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa--cgttttgggtaaaa 203  Q
    |||| |||| ||||||||||||   |||| ||| |||||||||||||| ||||   || |||||||||||||||| ||||||||    ||||||||||||    
T  10351325 tgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaa 10351226  T
Q  204 gtgtgatgtccatctca 220  Q
    |||||||||| ||||||    
T  10351225 gtgtgatgtctatctca 10351209  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 36522018 - 36521946
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 208  Q
    |||| ||||||||||| ||| |||| |||| |||||||||||  | || ||||| ||||||||||| ||||||    
T  36522018 aagttgaggttgaacactctttaaatgagaggacccataaaccaattgccttaaggttttgggtaagagtgtg 36521946  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 8481962 - 8482039
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 213  Q
    |||||||||||||||| | |||||| |||||||| |||||||||| || |||||  |||||||||| |||||| ||||    
T  8481962 aagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttgggtaagagtgtggtgtc 8482039  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 5034943 - 5034876
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaa 203  Q
    ||||||||||||| || | |||||  |||||||||||| |||||||||| |||| ||||||| |||||    
T  5034943 aagtggaggttgaccactttataagtgagatgacccatcaactcaatgttttaaggttttggataaaa 5034876  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 27226716 - 27226675
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaac 177  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  27226716 aagtggaggttgatcattttataaatgagatgacccataaac 27226675  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 6071168 - 6071240
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 208  Q
    |||||||||||||||| | |||||  ||||||| ||||||||||| || |||||  |||||| ||| ||||||    
T  6071168 aagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagattttggataagagtgtg 6071240  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 42480533 - 42480611
Alignment:
Q  111 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa 189  Q
    ||||||||||||| | ||||| || |||||||||||||||| | | |||  ||||||| |||||||||| |||||||||    
T  42480533 gttaaaagtctcatactatttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaactcgatgtcttaa 42480611  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 22028458 - 22028412
Alignment:
Q  167 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 213  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  22028458 gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtc 22028412  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 34544142 - 34544215
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacg-ttttgggtaaaagtgtg 208  Q
    ||||||||||||| || | |||||| |||| |||||||||||||| || ||||| | |||||||||| ||||||    
T  34544142 aagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttttgggtaagagtgtg 34544215  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 23630348 - 23630424
Alignment:
Q  144 gttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 220  Q
    |||||||| | |||||  |||| ||| ||||||||||| |||||||   |||||||||||||||||| ||| |||||    
T  23630348 gttgaacactttataagtgagacgactcataaactcaacgtcttaagactttgggtaaaagtgtgatttccctctca 23630424  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 1188710 - 1188638
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 208  Q
    |||||||||||||| ||| |||||  |||| ||| |||||||||| ||  |||| ||||||||||||||||||    
T  1188710 aagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgtg 1188638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 32594807 - 32594761
Alignment:
Q  167 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 213  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  32594807 gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtc 32594761  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 1187486 - 1187413
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 209  Q
    ||||||||||| |||||| |||||  |||| |||||||||||||| |  |||||  ||||| ||||||||||||    
T  1187486 aagtggaggttaaacattttataagtgagaagacccataaactcattaccttaagattttgagtaaaagtgtga 1187413  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 4154402 - 4154326
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 213  Q
    |||||||||||||||| | |||||  |||| |||||||||||||| || |||||  ||||||||||  ||||||||||    
T  4154402 aagtggaggttgaacactttataagtgaga-gacccataaactcattgccttaatattttgggtaagtgtgtgatgtc 4154326  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 7192786 - 7192835
Alignment:
Q  171 cataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 220  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||| ||||    
T  7192786 cataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactca 7192835  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 21619136 - 21619095
Alignment:
Q  167 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 208  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  21619136 gacccataaacccattgtcttaaggttttgggtaaaagtgtg 21619095  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 260846 - 260805
Alignment:
Q  136 aagtggaggttgaacattctataaaagagatgacccataaac 177  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  260846 aagtggaggttgatcattttataaatgagatgacccataaac 260805  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 32930698 - 32930775
Alignment:
Q  111 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtctta 188  Q
    |||| |||||| | ||| |||| | |||| || |||||||||| |||||  |||||||| ||||||||||||||||||    
T  32930698 gttagaagtcttatattgtttagaaaagtagaagttgaacattttataagtgagatgactcataaactcaatgtctta 32930775  T

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